Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ptchd3Q0EEE2 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ptchd3Q0EEE2 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ptchd3Q0EEE2 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC12.42□□□□□ -0.42
Ptchd3Q0EEE2 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ptchd3Q0EEE2 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ptchd3Q0EEE2 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ptchd3Q0EEE2 Gm27177-202ENSMUST00000183514 2703 ntBASIC12.42□□□□□ -0.42
Ptchd3Q0EEE2 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC12.42□□□□□ -0.42
Ptchd3Q0EEE2 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ptchd3Q0EEE2 Gm7104-201ENSMUST00000179741 2532 ntBASIC12.42□□□□□ -0.42
Ptchd3Q0EEE2 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ptchd3Q0EEE2 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC12.42□□□□□ -0.42
Ptchd3Q0EEE2 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC12.42□□□□□ -0.42
Ptchd3Q0EEE2 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ptchd3Q0EEE2 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ptchd3Q0EEE2 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Gm19817-201ENSMUST00000199764 2132 ntBASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Gm6161-201ENSMUST00000121942 1102 ntBASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Gm6254-201ENSMUST00000168178 1072 ntBASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Gm6153-201ENSMUST00000172004 1058 ntBASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Gm5641-202ENSMUST00000198699 1080 ntBASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Gm19931-201ENSMUST00000198920 368 ntBASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 CT573086.1-201ENSMUST00000227202 1074 ntBASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Gm4780-202ENSMUST00000215200 2644 ntBASIC12.41□□□□□ -0.42
Ptchd3Q0EEE2 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ptchd3Q0EEE2 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.43
Ptchd3Q0EEE2 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
Ptchd3Q0EEE2 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Ptchd3Q0EEE2 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.43
Ptchd3Q0EEE2 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC12.4□□□□□ -0.43
Ptchd3Q0EEE2 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ptchd3Q0EEE2 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ptchd3Q0EEE2 Gm9025-201ENSMUST00000122415 1575 ntBASIC12.39□□□□□ -0.43
Ptchd3Q0EEE2 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ptchd3Q0EEE2 AC113060.1-201ENSMUST00000225689 1573 ntBASIC12.39□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms