Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Col3a1P08121 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Col3a1P08121 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
Col3a1P08121 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Col3a1P08121 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC15.16■□□□□ 0.02
Col3a1P08121 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC15.16■□□□□ 0.02
Col3a1P08121 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC15.16■□□□□ 0.02
Col3a1P08121 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col3a1P08121 Crry-ps-201ENSMUST00000079090 1309 ntBASIC15.16■□□□□ 0.02
Col3a1P08121 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC15.15■□□□□ 0.02
Col3a1P08121 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC15.15■□□□□ 0.02
Col3a1P08121 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Gm24934-201ENSMUST00000103764 111 ntBASIC15.15■□□□□ 0.02
Col3a1P08121 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
Col3a1P08121 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Gm22334-201ENSMUST00000158070 133 ntBASIC15.15■□□□□ 0.02
Col3a1P08121 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Col3a1P08121 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC15.15■□□□□ 0.02
Col3a1P08121 Gm34767-201ENSMUST00000191813 1062 ntBASIC15.15■□□□□ 0.02
Col3a1P08121 Gm17812-201ENSMUST00000204935 318 ntBASIC15.15■□□□□ 0.02
Col3a1P08121 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC15.15■□□□□ 0.02
Col3a1P08121 AC159205.5-202ENSMUST00000224849 386 ntBASIC15.15■□□□□ 0.02
Col3a1P08121 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Gm9996-201ENSMUST00000070359 913 ntBASIC15.15■□□□□ 0.02
Col3a1P08121 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Gm26035-201ENSMUST00000083065 308 ntBASIC15.15■□□□□ 0.02
Col3a1P08121 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Col3a1P08121 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC15.15■□□□□ 0.02
Col3a1P08121 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
Col3a1P08121 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC15.15■□□□□ 0.02
Col3a1P08121 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC15.15■□□□□ 0.02
Col3a1P08121 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
Col3a1P08121 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC15.15■□□□□ 0.02
Col3a1P08121 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Col3a1P08121 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC15.15■□□□□ 0.02
Col3a1P08121 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col3a1P08121 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC15.14■□□□□ 0.01
Col3a1P08121 Gm44958-201ENSMUST00000203734 736 ntBASIC15.14■□□□□ 0.01
Col3a1P08121 Gm45433-201ENSMUST00000209386 247 ntBASIC15.14■□□□□ 0.01
Col3a1P08121 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Aprt-ps-201ENSMUST00000212311 505 ntBASIC15.14■□□□□ 0.01
Col3a1P08121 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC15.14■□□□□ 0.01
Col3a1P08121 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC15.14■□□□□ 0.01
Col3a1P08121 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC15.14■□□□□ 0.01
Col3a1P08121 AC154252.2-201ENSMUST00000223593 767 ntBASIC15.14■□□□□ 0.01
Col3a1P08121 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC15.14■□□□□ 0.01
Col3a1P08121 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
Col3a1P08121 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Col3a1P08121 Gm7002-201ENSMUST00000221386 2165 ntBASIC15.14■□□□□ 0.01
Col3a1P08121 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms