Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Vps28Q9D1C8 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Vps28Q9D1C8 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
Vps28Q9D1C8 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
Vps28Q9D1C8 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vps28Q9D1C8 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vps28Q9D1C8 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Vps28Q9D1C8 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Vps28Q9D1C8 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.3
Vps28Q9D1C8 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Gm37437-201ENSMUST00000194451 1937 ntBASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Gm37008-201ENSMUST00000195712 319 ntBASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Gm19184-201ENSMUST00000196798 928 ntBASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Gm45880-201ENSMUST00000213041 853 ntBASIC13.2□□□□□ -0.3
Vps28Q9D1C8 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Vps28Q9D1C8 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 AC117194.1-201ENSMUST00000224847 3002 ntBASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Gm12363-201ENSMUST00000122250 668 ntBASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Gm42693-201ENSMUST00000196779 631 ntBASIC13.19□□□□□ -0.3
Vps28Q9D1C8 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Gm4935-201ENSMUST00000221316 1198 ntBASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
Vps28Q9D1C8 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Vps28Q9D1C8 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Vps28Q9D1C8 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Vps28Q9D1C8 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Vps28Q9D1C8 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Vps28Q9D1C8 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Vps28Q9D1C8 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms