Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smarce1O54941 Adra1a-206ENSMUST00000225182 2337 ntBASIC15.31■□□□□ 0.04
Smarce1O54941 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smarce1O54941 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smarce1O54941 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
Smarce1O54941 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smarce1O54941 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Smarce1O54941 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smarce1O54941 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
Smarce1O54941 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smarce1O54941 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC15.3■□□□□ 0.04
Smarce1O54941 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC15.3■□□□□ 0.04
Smarce1O54941 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smarce1O54941 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Smarce1O54941 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Smarce1O54941 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Smarce1O54941 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smarce1O54941 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smarce1O54941 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Smarce1O54941 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC15.3■□□□□ 0.04
Smarce1O54941 Gm18473-201ENSMUST00000220543 868 ntBASIC15.3■□□□□ 0.04
Smarce1O54941 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smarce1O54941 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smarce1O54941 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smarce1O54941 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smarce1O54941 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Smarce1O54941 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Smarce1O54941 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Smarce1O54941 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Smarce1O54941 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Smarce1O54941 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
Smarce1O54941 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Smarce1O54941 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC15.29■□□□□ 0.04
Smarce1O54941 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Gm6152-201ENSMUST00000151704 340 ntBASIC15.29■□□□□ 0.04
Smarce1O54941 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC15.29■□□□□ 0.04
Smarce1O54941 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Smarce1O54941 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC15.29■□□□□ 0.04
Smarce1O54941 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Smarce1O54941 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC15.29■□□□□ 0.04
Smarce1O54941 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC15.29■□□□□ 0.04
Smarce1O54941 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Smarce1O54941 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC15.29■□□□□ 0.04
Smarce1O54941 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Smarce1O54941 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smarce1O54941 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smarce1O54941 Rubie-203ENSMUST00000227803 2430 ntBASIC15.28■□□□□ 0.04
Smarce1O54941 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Smarce1O54941 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smarce1O54941 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Smarce1O54941 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smarce1O54941 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smarce1O54941 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Smarce1O54941 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smarce1O54941 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smarce1O54941 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smarce1O54941 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smarce1O54941 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smarce1O54941 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Smarce1O54941 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC15.28■□□□□ 0.04
Smarce1O54941 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smarce1O54941 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smarce1O54941 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC15.28■□□□□ 0.04
Smarce1O54941 Gm12291-201ENSMUST00000121627 311 ntBASIC15.28■□□□□ 0.04
Smarce1O54941 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC15.28■□□□□ 0.04
Smarce1O54941 Gm44855-201ENSMUST00000205725 362 ntBASIC15.28■□□□□ 0.04
Smarce1O54941 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smarce1O54941 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smarce1O54941 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Smarce1O54941 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Smarce1O54941 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms