Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC13.69□□□□□ -0.22
Sf3b1Q99NB9 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Gm15808-201ENSMUST00000119046 604 ntBASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Gm44772-201ENSMUST00000207623 1191 ntBASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Gm18056-201ENSMUST00000207670 568 ntBASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Gm18061-201ENSMUST00000208350 562 ntBASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Gm18063-201ENSMUST00000208529 568 ntBASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Gm18052-201ENSMUST00000208750 559 ntBASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 CT009713.10-201ENSMUST00000225013 1986 ntBASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Sf3b1Q99NB9 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Gm5904-201ENSMUST00000210286 865 ntBASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 AC132317.1-201ENSMUST00000227227 962 ntBASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 CT025533.2-201ENSMUST00000228715 1248 ntBASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Gm5939-201ENSMUST00000119613 2874 ntBASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Sf3b1Q99NB9 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC13.66□□□□□ -0.22
Sf3b1Q99NB9 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Sf3b1Q99NB9 Gm25668-201ENSMUST00000157700 129 ntBASIC13.66□□□□□ -0.22
Sf3b1Q99NB9 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC13.66□□□□□ -0.22
Sf3b1Q99NB9 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC13.66□□□□□ -0.22
Sf3b1Q99NB9 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
Sf3b1Q99NB9 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC13.66□□□□□ -0.22
Sf3b1Q99NB9 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC13.66□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms