Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Gm11400-201ENSMUST00000120853 1214 ntBASIC12.58□□□□□ -0.4
Msh4Q99MT2 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Gm8810-201ENSMUST00000172895 754 ntBASIC12.58□□□□□ -0.4
Msh4Q99MT2 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Gm29649-201ENSMUST00000185649 419 ntBASIC12.58□□□□□ -0.4
Msh4Q99MT2 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC12.58□□□□□ -0.4
Msh4Q99MT2 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Gm42442-201ENSMUST00000197951 1133 ntBASIC12.58□□□□□ -0.4
Msh4Q99MT2 Gm42929-201ENSMUST00000198374 1286 ntBASIC12.58□□□□□ -0.4
Msh4Q99MT2 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Gm45841-201ENSMUST00000207700 164 ntBASIC12.58□□□□□ -0.4
Msh4Q99MT2 AC151895.1-201ENSMUST00000219025 1742 ntBASIC12.58□□□□□ -0.4
Msh4Q99MT2 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msh4Q99MT2 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Gm44851-201ENSMUST00000205735 2309 ntBASIC12.57□□□□□ -0.4
Msh4Q99MT2 Gm42863-201ENSMUST00000197875 2958 ntBASIC12.57□□□□□ -0.4
Msh4Q99MT2 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Gm5466-201ENSMUST00000119395 1890 ntBASIC12.57□□□□□ -0.4
Msh4Q99MT2 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Gm8213-201ENSMUST00000118191 441 ntBASIC12.57□□□□□ -0.4
Msh4Q99MT2 Gm10156-201ENSMUST00000122364 462 ntBASIC12.57□□□□□ -0.4
Msh4Q99MT2 Gm24644-201ENSMUST00000157114 139 ntBASIC12.57□□□□□ -0.4
Msh4Q99MT2 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Mir7085-201ENSMUST00000184353 66 ntBASIC12.57□□□□□ -0.4
Msh4Q99MT2 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Msh4Q99MT2 AC117194.1-201ENSMUST00000224847 3002 ntBASIC12.57□□□□□ -0.4
Msh4Q99MT2 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC12.57□□□□□ -0.4
Msh4Q99MT2 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Msh4Q99MT2 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Gm37324-201ENSMUST00000194500 4504 ntBASIC12.57□□□□□ -0.4
Msh4Q99MT2 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msh4Q99MT2 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Msh4Q99MT2 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Msh4Q99MT2 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msh4Q99MT2 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Msh4Q99MT2 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msh4Q99MT2 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msh4Q99MT2 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Msh4Q99MT2 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Msh4Q99MT2 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Msh4Q99MT2 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msh4Q99MT2 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Msh4Q99MT2 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msh4Q99MT2 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Msh4Q99MT2 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msh4Q99MT2 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC12.56□□□□□ -0.4
Msh4Q99MT2 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms