Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Usp47Q8BY87 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp47Q8BY87 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC18.12■□□□□ 0.49
Usp47Q8BY87 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp47Q8BY87 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp47Q8BY87 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Usp47Q8BY87 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Usp47Q8BY87 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp47Q8BY87 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Gm37201-201ENSMUST00000191845 523 ntBASIC18.11■□□□□ 0.49
Usp47Q8BY87 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp47Q8BY87 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC18.11■□□□□ 0.49
Usp47Q8BY87 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC18.11■□□□□ 0.49
Usp47Q8BY87 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp47Q8BY87 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Gm23270-201ENSMUST00000104055 131 ntBASIC18.1■□□□□ 0.49
Usp47Q8BY87 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC18.1■□□□□ 0.49
Usp47Q8BY87 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp47Q8BY87 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Usp47Q8BY87 Gm43045-201ENSMUST00000198725 2095 ntBASIC18.1■□□□□ 0.49
Usp47Q8BY87 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC18.09■□□□□ 0.49
Usp47Q8BY87 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Gm26083-201ENSMUST00000157904 193 ntBASIC18.09■□□□□ 0.49
Usp47Q8BY87 Gm17376-201ENSMUST00000166016 84 ntBASIC18.09■□□□□ 0.49
Usp47Q8BY87 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Gm38241-201ENSMUST00000192641 898 ntBASIC18.09■□□□□ 0.49
Usp47Q8BY87 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp47Q8BY87 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Usp47Q8BY87 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp47Q8BY87 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC18.08■□□□□ 0.49
Usp47Q8BY87 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Usp47Q8BY87 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Usp47Q8BY87 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Usp47Q8BY87 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp47Q8BY87 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp47Q8BY87 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp47Q8BY87 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp47Q8BY87 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp47Q8BY87 Gm14381-201ENSMUST00000122105 414 ntBASIC18.08■□□□□ 0.49
Usp47Q8BY87 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC18.08■□□□□ 0.49
Usp47Q8BY87 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp47Q8BY87 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC18.08■□□□□ 0.49
Usp47Q8BY87 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
Usp47Q8BY87 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp47Q8BY87 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp47Q8BY87 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Usp47Q8BY87 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms