Protein–RNA interactions for Protein: Q62018

Ctr9, RNA polymerase-associated protein CTR9 homolog, mousemouse

Known RBP Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ctr9Q62018 Gm8798-201ENSMUST00000211877 1661 ntBASIC15.22■□□□□ 0.03
Ctr9Q62018 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC15.22■□□□□ 0.03
Ctr9Q62018 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
Ctr9Q62018 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Gm44775-201ENSMUST00000207266 1456 ntBASIC15.22■□□□□ 0.03
Ctr9Q62018 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Ctr9Q62018 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Ctr9Q62018 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC15.22■□□□□ 0.03
Ctr9Q62018 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC15.22■□□□□ 0.03
Ctr9Q62018 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC15.22■□□□□ 0.03
Ctr9Q62018 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC15.22■□□□□ 0.03
Ctr9Q62018 Gm8801-201ENSMUST00000173255 1064 ntBASIC15.22■□□□□ 0.03
Ctr9Q62018 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Gm43416-201ENSMUST00000201916 1015 ntBASIC15.22■□□□□ 0.03
Ctr9Q62018 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC15.22■□□□□ 0.03
Ctr9Q62018 Olfr284-202ENSMUST00000206647 966 ntBASIC15.22■□□□□ 0.03
Ctr9Q62018 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Ctr9Q62018 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC15.21■□□□□ 0.03
Ctr9Q62018 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC15.21■□□□□ 0.03
Ctr9Q62018 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ctr9Q62018 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ctr9Q62018 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ctr9Q62018 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Ctr9Q62018 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC15.21■□□□□ 0.03
Ctr9Q62018 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC15.21■□□□□ 0.03
Ctr9Q62018 Gm13786-201ENSMUST00000122371 333 ntBASIC15.21■□□□□ 0.03
Ctr9Q62018 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC15.21■□□□□ 0.03
Ctr9Q62018 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Ctr9Q62018 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC15.21■□□□□ 0.03
Ctr9Q62018 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Ctr9Q62018 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Ctr9Q62018 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Ctr9Q62018 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC15.21■□□□□ 0.03
Ctr9Q62018 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.03
Ctr9Q62018 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Ctr9Q62018 Olfr582-201ENSMUST00000098212 960 ntBASIC15.21■□□□□ 0.03
Ctr9Q62018 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Ctr9Q62018 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
Ctr9Q62018 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Ctr9Q62018 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Ctr9Q62018 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ctr9Q62018 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ctr9Q62018 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Ctr9Q62018 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Ctr9Q62018 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Ctr9Q62018 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Ctr9Q62018 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC15.21■□□□□ 0.02
Ctr9Q62018 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Ctr9Q62018 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC15.2■□□□□ 0.02
Ctr9Q62018 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
Ctr9Q62018 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Ctr9Q62018 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC15.2■□□□□ 0.02
Ctr9Q62018 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Ctr9Q62018 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ctr9Q62018 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ctr9Q62018 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Ctr9Q62018 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC15.2■□□□□ 0.02
Ctr9Q62018 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC15.2■□□□□ 0.02
Ctr9Q62018 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC15.2■□□□□ 0.02
Ctr9Q62018 Mir1247-201ENSMUST00000116706 82 ntBASIC15.2■□□□□ 0.02
Ctr9Q62018 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC15.2■□□□□ 0.02
Ctr9Q62018 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC15.2■□□□□ 0.02
Ctr9Q62018 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Ctr9Q62018 Gm24548-201ENSMUST00000158650 108 ntBASIC15.2■□□□□ 0.02
Ctr9Q62018 Gm8738-201ENSMUST00000172606 329 ntBASIC15.2■□□□□ 0.02
Ctr9Q62018 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC15.2■□□□□ 0.02
Ctr9Q62018 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC15.2■□□□□ 0.02
Ctr9Q62018 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC15.2■□□□□ 0.02
Ctr9Q62018 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ctr9Q62018 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Ctr9Q62018 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ctr9Q62018 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Ctr9Q62018 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC15.2■□□□□ 0.02
Ctr9Q62018 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Ctr9Q62018 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ctr9Q62018 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ctr9Q62018 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ctr9Q62018 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ctr9Q62018 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ctr9Q62018 Gm44065-201ENSMUST00000203184 3527 ntBASIC15.2■□□□□ 0.02
Ctr9Q62018 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Ctr9Q62018 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 79.4 ms