Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim58Q5NCC9 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim58Q5NCC9 Gm44942-201ENSMUST00000096093 2072 ntBASIC16.31■□□□□ 0.2
Trim58Q5NCC9 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim58Q5NCC9 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim58Q5NCC9 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim58Q5NCC9 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim58Q5NCC9 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim58Q5NCC9 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
Trim58Q5NCC9 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 AC159195.1-201ENSMUST00000225867 2086 ntBASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim58Q5NCC9 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Gm22331-201ENSMUST00000158066 136 ntBASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Wdyhv1-206ENSMUST00000227142 786 ntBASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Gm10146-201ENSMUST00000072739 309 ntBASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim58Q5NCC9 Gm43858-201ENSMUST00000199418 1778 ntBASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Gm17208-201ENSMUST00000168388 535 ntBASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Gm27331-201ENSMUST00000183705 60 ntBASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Gm5896-201ENSMUST00000189662 1024 ntBASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Gm5035-201ENSMUST00000215581 927 ntBASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim58Q5NCC9 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 63.3 ms