Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC11.95□□□□□ -0.5
Cd40lgP27548 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Cd40lgP27548 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cd40lgP27548 Tardbp-210ENSMUST00000172073 6513 ntTSL 5 BASIC11.94□□□□□ -0.5
Cd40lgP27548 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Cd40lgP27548 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC11.94□□□□□ -0.5
Cd40lgP27548 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Cd40lgP27548 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Chd3-202ENSMUST00000108661 7261 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
Cd40lgP27548 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC11.94□□□□□ -0.5
Cd40lgP27548 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Gm5687-201ENSMUST00000118252 640 ntBASIC11.94□□□□□ -0.5
Cd40lgP27548 Gm11400-201ENSMUST00000120853 1214 ntBASIC11.94□□□□□ -0.5
Cd40lgP27548 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC11.94□□□□□ -0.5
Cd40lgP27548 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC11.94□□□□□ -0.5
Cd40lgP27548 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Gm8652-201ENSMUST00000181363 964 ntBASIC11.94□□□□□ -0.5
Cd40lgP27548 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC11.94□□□□□ -0.5
Cd40lgP27548 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC11.94□□□□□ -0.5
Cd40lgP27548 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC11.94□□□□□ -0.5
Cd40lgP27548 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Cdk7-205ENSMUST00000225990 1159 ntBASIC11.94□□□□□ -0.5
Cd40lgP27548 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
Cd40lgP27548 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Cd40lgP27548 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Lmo7-205ENSMUST00000159314 5774 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Cd40lgP27548 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Gm15222-202ENSMUST00000228667 1726 ntBASIC11.94□□□□□ -0.5
Cd40lgP27548 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Gm10040-201ENSMUST00000080726 1662 ntBASIC11.94□□□□□ -0.5
Cd40lgP27548 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Cd40lgP27548 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Cd40lgP27548 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Cd40lgP27548 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC11.93□□□□□ -0.5
Cd40lgP27548 Gm15544-201ENSMUST00000118776 1531 ntBASIC11.93□□□□□ -0.5
Cd40lgP27548 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC11.93□□□□□ -0.5
Cd40lgP27548 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Gm10327-201ENSMUST00000105222 1002 ntBASIC11.93□□□□□ -0.5
Cd40lgP27548 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Gm16202-201ENSMUST00000117532 544 ntBASIC11.93□□□□□ -0.5
Cd40lgP27548 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC11.93□□□□□ -0.5
Cd40lgP27548 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC11.93□□□□□ -0.5
Cd40lgP27548 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC11.93□□□□□ -0.5
Cd40lgP27548 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 AC153962.4-201ENSMUST00000217878 242 ntBASIC11.93□□□□□ -0.5
Cd40lgP27548 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC11.93□□□□□ -0.5
Cd40lgP27548 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Cd40lgP27548 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 161.4 ms