Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Gm5466-201ENSMUST00000119395 1890 ntBASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC12.19□□□□□ -0.46
Trim3Q9R1R2 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Gm5687-201ENSMUST00000118252 640 ntBASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Gm11814-201ENSMUST00000119515 929 ntBASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Gm38671-201ENSMUST00000200573 130 ntBASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Rn7sk-201ENSMUST00000083103 331 ntBASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Gm26315-201ENSMUST00000083890 321 ntBASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Gm9755-201ENSMUST00000032981 1356 ntBASIC12.18□□□□□ -0.46
Trim3Q9R1R2 Gm5422-201ENSMUST00000050717 2721 ntBASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Gm6152-201ENSMUST00000151704 340 ntBASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Gm27839-201ENSMUST00000184242 106 ntBASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Gm27486-201ENSMUST00000184923 80 ntBASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Gm44799-201ENSMUST00000207639 1202 ntBASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim3Q9R1R2 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms