Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 7420461P10Rik-201ENSMUST00000169439 781 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Prrg2-211ENSMUST00000211337 676 ntTSL 3 BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Gm4930-201ENSMUST00000219926 1087 ntBASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Gm12164-201ENSMUST00000121695 551 ntBASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Gm9884-201ENSMUST00000194343 1222 ntBASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Gm29808-201ENSMUST00000194419 468 ntBASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Gm44315-201ENSMUST00000203041 219 ntBASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Uqcc3-201ENSMUST00000096253 829 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn4aQ9ER60 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 AC154671.1-201ENSMUST00000228617 1578 ntBASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Art5-202ENSMUST00000106934 843 ntTSL 5 BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Banf2-202ENSMUST00000110032 409 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Nnmt-202ENSMUST00000119426 912 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 AC121357.1-201ENSMUST00000227365 608 ntBASIC17.11■□□□□ 0.33
Scn4aQ9ER60 AC121960.1-201ENSMUST00000227982 564 ntBASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Mocs2-216ENSMUST00000184672 1447 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Scn4aQ9ER60 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Gm11560-201ENSMUST00000117567 948 ntBASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Gm14892-201ENSMUST00000117636 267 ntBASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Nudt12os-201ENSMUST00000145848 939 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Gm18304-201ENSMUST00000189162 546 ntBASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Gm37728-201ENSMUST00000195025 2292 ntBASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Gm38151-201ENSMUST00000195085 289 ntBASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Gm37197-201ENSMUST00000195607 401 ntBASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Gm43134-201ENSMUST00000199434 1886 ntBASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Gm5907-202ENSMUST00000210969 661 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Gm20735-202ENSMUST00000212387 519 ntTSL 2 BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Cklf-210ENSMUST00000212939 737 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Psca-201ENSMUST00000023265 860 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Uqcrc2-201ENSMUST00000033176 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 AC166836.1-201ENSMUST00000219933 1795 ntBASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Gm8271-201ENSMUST00000171053 1469 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Gm26632-201ENSMUST00000181120 1400 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Tomm5-201ENSMUST00000107807 442 ntTSL 2 BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Gm12756-201ENSMUST00000126294 599 ntTSL 3 BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Gm4310-201ENSMUST00000177847 889 ntBASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Vmn1r206-201ENSMUST00000187140 1135 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Tex101-201ENSMUST00000078001 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn4aQ9ER60 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn4aQ9ER60 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn4aQ9ER60 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn4aQ9ER60 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn4aQ9ER60 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn4aQ9ER60 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn4aQ9ER60 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn4aQ9ER60 Gm11957-201ENSMUST00000118304 779 ntBASIC17.09■□□□□ 0.33
Scn4aQ9ER60 Prdx2-208ENSMUST00000164807 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn4aQ9ER60 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Scn4aQ9ER60 Mir3060-201ENSMUST00000175339 83 ntBASIC17.09■□□□□ 0.33
Scn4aQ9ER60 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Scn4aQ9ER60 Gm9136-201ENSMUST00000193368 454 ntBASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms