Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.16■□□□□ 0.66
Lmx1bO88609 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC19.16■□□□□ 0.66
Lmx1bO88609 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
Lmx1bO88609 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lmx1bO88609 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Lmx1bO88609 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lmx1bO88609 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Lmx1bO88609 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lmx1bO88609 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lmx1bO88609 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC19.15■□□□□ 0.66
Lmx1bO88609 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC19.15■□□□□ 0.66
Lmx1bO88609 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lmx1bO88609 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lmx1bO88609 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Lmx1bO88609 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Lmx1bO88609 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC19.14■□□□□ 0.65
Lmx1bO88609 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Lmx1bO88609 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lmx1bO88609 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lmx1bO88609 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lmx1bO88609 Gm8093-201ENSMUST00000128935 1892 ntBASIC19.14■□□□□ 0.65
Lmx1bO88609 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Lmx1bO88609 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC19.13■□□□□ 0.65
Lmx1bO88609 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Lmx1bO88609 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Lmx1bO88609 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC19.13■□□□□ 0.65
Lmx1bO88609 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC19.13■□□□□ 0.65
Lmx1bO88609 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lmx1bO88609 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Lmx1bO88609 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.13■□□□□ 0.65
Lmx1bO88609 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lmx1bO88609 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Lmx1bO88609 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Lmx1bO88609 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Lmx1bO88609 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Lmx1bO88609 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Lmx1bO88609 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Lmx1bO88609 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Lmx1bO88609 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC19.12■□□□□ 0.65
Lmx1bO88609 Gm7417-201ENSMUST00000192950 473 ntBASIC19.12■□□□□ 0.65
Lmx1bO88609 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC19.12■□□□□ 0.65
Lmx1bO88609 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC19.12■□□□□ 0.65
Lmx1bO88609 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Lmx1bO88609 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Lmx1bO88609 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Lmx1bO88609 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Lmx1bO88609 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Lmx1bO88609 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Lmx1bO88609 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Lmx1bO88609 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Lmx1bO88609 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Lmx1bO88609 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC19.11■□□□□ 0.65
Lmx1bO88609 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Lmx1bO88609 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Lmx1bO88609 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Lmx1bO88609 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lmx1bO88609 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lmx1bO88609 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lmx1bO88609 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Lmx1bO88609 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC19.1■□□□□ 0.65
Lmx1bO88609 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.1■□□□□ 0.65
Lmx1bO88609 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lmx1bO88609 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Lmx1bO88609 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lmx1bO88609 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC19.09■□□□□ 0.65
Lmx1bO88609 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC19.09■□□□□ 0.65
Lmx1bO88609 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC19.09■□□□□ 0.65
Lmx1bO88609 Dmtn-209ENSMUST00000228295 2572 ntBASIC19.09■□□□□ 0.65
Lmx1bO88609 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lmx1bO88609 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Lmx1bO88609 Gm26766-202ENSMUST00000227544 2347 ntBASIC19.08■□□□□ 0.65
Lmx1bO88609 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Lmx1bO88609 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC19.08■□□□□ 0.65
Lmx1bO88609 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC19.08■□□□□ 0.64
Lmx1bO88609 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC19.08■□□□□ 0.64
Lmx1bO88609 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC19.08■□□□□ 0.64
Lmx1bO88609 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Lmx1bO88609 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
Lmx1bO88609 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC19.07■□□□□ 0.64
Lmx1bO88609 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Lmx1bO88609 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lmx1bO88609 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC19.07■□□□□ 0.64
Lmx1bO88609 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Lmx1bO88609 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lmx1bO88609 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lmx1bO88609 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Lmx1bO88609 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Lmx1bO88609 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC19.06■□□□□ 0.64
Lmx1bO88609 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
Lmx1bO88609 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lmx1bO88609 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Lmx1bO88609 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lmx1bO88609 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lmx1bO88609 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC19.06■□□□□ 0.64
Lmx1bO88609 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lmx1bO88609 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Lmx1bO88609 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lmx1bO88609 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lmx1bO88609 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Lmx1bO88609 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms