Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Gm37497-201ENSMUST00000195830 798 ntBASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 AC155237.1-201ENSMUST00000226196 1279 ntBASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Ddx56Q9D0R4 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Gm11478-201ENSMUST00000117851 599 ntBASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Gm5035-201ENSMUST00000215581 927 ntBASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Gm2824-203ENSMUST00000226189 1228 ntBASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Gm14608-201ENSMUST00000120030 1553 ntBASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Gm38355-201ENSMUST00000192514 1570 ntBASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 AC116503.1-201ENSMUST00000215445 2192 ntBASIC13.61□□□□□ -0.23
Ddx56Q9D0R4 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Gm3052-202ENSMUST00000188254 2224 ntBASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Gm13369-201ENSMUST00000119442 987 ntBASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Gm22331-201ENSMUST00000158066 136 ntBASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Ddx56Q9D0R4 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC13.6□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms