Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 Gm18473-201ENSMUST00000220543 868 ntBASIC12.98□□□□□ -0.33
Vps39Q8R5L3 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Vps39Q8R5L3 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Gm15222-202ENSMUST00000228667 1726 ntBASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Gm14350-201ENSMUST00000116642 640 ntBASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Gm6152-201ENSMUST00000151704 340 ntBASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Gm38297-201ENSMUST00000195122 1057 ntBASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Gm44069-201ENSMUST00000204898 506 ntBASIC12.97□□□□□ -0.33
Vps39Q8R5L3 AC158982.1-201ENSMUST00000228377 901 ntBASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Ntrk2-204ENSMUST00000224259 3049 ntBASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Vps39Q8R5L3 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 AL593843.1-201ENSMUST00000195891 145 ntBASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Gm5276-201ENSMUST00000196683 1047 ntBASIC12.96□□□□□ -0.33
Vps39Q8R5L3 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC12.96□□□□□ -0.33
Vps39Q8R5L3 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Gm6458-201ENSMUST00000211573 635 ntBASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 AC154305.4-201ENSMUST00000224520 614 ntBASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Gm2423-201ENSMUST00000074863 733 ntBASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Vps39Q8R5L3 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC12.96□□□□□ -0.34
Vps39Q8R5L3 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.34
Vps39Q8R5L3 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Vps39Q8R5L3 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Vps39Q8R5L3 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Vps39Q8R5L3 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Vps39Q8R5L3 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Vps39Q8R5L3 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC12.95□□□□□ -0.34
Vps39Q8R5L3 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps39Q8R5L3 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Vps39Q8R5L3 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Vps39Q8R5L3 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Vps39Q8R5L3 Gm43045-201ENSMUST00000198725 2095 ntBASIC12.95□□□□□ -0.34
Vps39Q8R5L3 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC12.95□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms