Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC11.78□□□□□ -0.52
Usf1Q61069 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Usf1Q61069 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Usf1Q61069 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Usf1Q61069 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Usf1Q61069 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Usf1Q61069 Gm45495-201ENSMUST00000200940 1700 ntBASIC11.77□□□□□ -0.52
Usf1Q61069 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC11.77□□□□□ -0.52
Usf1Q61069 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Usf1Q61069 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Usf1Q61069 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Usf1Q61069 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Usf1Q61069 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC11.77□□□□□ -0.52
Usf1Q61069 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
Usf1Q61069 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Usf1Q61069 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Usf1Q61069 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
Usf1Q61069 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Usf1Q61069 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Usf1Q61069 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC11.77□□□□□ -0.53
Usf1Q61069 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Usf1Q61069 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Usf1Q61069 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
Usf1Q61069 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC11.77□□□□□ -0.53
Usf1Q61069 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC11.77□□□□□ -0.53
Usf1Q61069 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC11.77□□□□□ -0.53
Usf1Q61069 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC11.77□□□□□ -0.53
Usf1Q61069 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Usf1Q61069 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Usf1Q61069 Gm9061-201ENSMUST00000182707 1006 ntBASIC11.77□□□□□ -0.53
Usf1Q61069 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Usf1Q61069 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Usf1Q61069 Gm37835-201ENSMUST00000193305 361 ntBASIC11.77□□□□□ -0.53
Usf1Q61069 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC11.77□□□□□ -0.53
Usf1Q61069 Gm44136-201ENSMUST00000203819 1106 ntBASIC11.77□□□□□ -0.53
Usf1Q61069 Gm8913-201ENSMUST00000209491 641 ntBASIC11.77□□□□□ -0.53
Usf1Q61069 AC166051.1-201ENSMUST00000214313 210 ntBASIC11.77□□□□□ -0.53
Usf1Q61069 AC141438.2-201ENSMUST00000215068 271 ntBASIC11.77□□□□□ -0.53
Usf1Q61069 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC11.77□□□□□ -0.53
Usf1Q61069 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Usf1Q61069 AC154222.2-201ENSMUST00000225848 607 ntBASIC11.77□□□□□ -0.53
Usf1Q61069 AC135114.1-201ENSMUST00000228682 270 ntBASIC11.77□□□□□ -0.53
Usf1Q61069 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC11.77□□□□□ -0.53
Usf1Q61069 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Usf1Q61069 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Usf1Q61069 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Usf1Q61069 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Usf1Q61069 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Usf1Q61069 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC11.77□□□□□ -0.53
Usf1Q61069 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Usf1Q61069 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC11.77□□□□□ -0.53
Usf1Q61069 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC11.77□□□□□ -0.53
Usf1Q61069 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Usf1Q61069 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Usf1Q61069 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Usf1Q61069 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC11.76□□□□□ -0.53
Usf1Q61069 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC11.76□□□□□ -0.53
Usf1Q61069 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
Usf1Q61069 Gm12286-201ENSMUST00000119246 1002 ntBASIC11.76□□□□□ -0.53
Usf1Q61069 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC11.76□□□□□ -0.53
Usf1Q61069 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
Usf1Q61069 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC11.76□□□□□ -0.53
Usf1Q61069 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC11.76□□□□□ -0.53
Usf1Q61069 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC11.76□□□□□ -0.53
Usf1Q61069 AC167013.1-201ENSMUST00000228592 202 ntBASIC11.76□□□□□ -0.53
Usf1Q61069 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Usf1Q61069 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Usf1Q61069 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC11.76□□□□□ -0.53
Usf1Q61069 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Usf1Q61069 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
Usf1Q61069 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Usf1Q61069 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC11.76□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 77.7 ms