Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Gm9025-201ENSMUST00000122415 1575 ntBASIC12.57□□□□□ -0.4
Usp39Q3TIX9 AC113060.1-201ENSMUST00000225689 1573 ntBASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Gm6447-201ENSMUST00000118905 835 ntBASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Gm27701-201ENSMUST00000184498 110 ntBASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Rn7sk-201ENSMUST00000083103 331 ntBASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Gm26315-201ENSMUST00000083890 321 ntBASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Usp39Q3TIX9 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Gm26616-202ENSMUST00000195676 3107 ntBASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Gm28911-201ENSMUST00000188837 117 ntBASIC12.56□□□□□ -0.4
Usp39Q3TIX9 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Usp39Q3TIX9 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
Usp39Q3TIX9 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Usp39Q3TIX9 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp39Q3TIX9 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp39Q3TIX9 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp39Q3TIX9 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Usp39Q3TIX9 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp39Q3TIX9 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Usp39Q3TIX9 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Usp39Q3TIX9 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms