Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Scn11aQ9R053 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Scn11aQ9R053 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC15.11■□□□□ 0.01
Scn11aQ9R053 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC15.11■□□□□ 0.01
Scn11aQ9R053 Gm10051-201ENSMUST00000145209 414 ntBASIC15.11■□□□□ 0.01
Scn11aQ9R053 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC15.11■□□□□ 0.01
Scn11aQ9R053 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
Scn11aQ9R053 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Gm43962-201ENSMUST00000203898 190 ntBASIC15.11■□□□□ 0.01
Scn11aQ9R053 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC15.11■□□□□ 0.01
Scn11aQ9R053 AC099645.1-201ENSMUST00000226476 1105 ntBASIC15.11■□□□□ 0.01
Scn11aQ9R053 Gm9996-201ENSMUST00000070359 913 ntBASIC15.11■□□□□ 0.01
Scn11aQ9R053 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Gm6198-201ENSMUST00000191337 2929 ntBASIC15.1■□□□□ 0.01
Scn11aQ9R053 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Gm43045-201ENSMUST00000198725 2095 ntBASIC15.1■□□□□ 0.01
Scn11aQ9R053 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Gm24934-201ENSMUST00000103764 111 ntBASIC15.1■□□□□ 0.01
Scn11aQ9R053 Gm11675-201ENSMUST00000121873 832 ntBASIC15.1■□□□□ 0.01
Scn11aQ9R053 Gm26361-201ENSMUST00000158868 186 ntBASIC15.1■□□□□ 0.01
Scn11aQ9R053 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC15.1■□□□□ 0.01
Scn11aQ9R053 AC159205.5-202ENSMUST00000224849 386 ntBASIC15.1■□□□□ 0.01
Scn11aQ9R053 Gm26035-201ENSMUST00000083065 308 ntBASIC15.1■□□□□ 0.01
Scn11aQ9R053 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Scn11aQ9R053 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC15.09■□□□□ 0.01
Scn11aQ9R053 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC15.09■□□□□ 0.01
Scn11aQ9R053 AC154252.2-201ENSMUST00000223593 767 ntBASIC15.09■□□□□ 0.01
Scn11aQ9R053 CT025551.1-201ENSMUST00000223996 692 ntBASIC15.09■□□□□ 0.01
Scn11aQ9R053 AC166344.1-202ENSMUST00000224139 234 ntBASIC15.09■□□□□ 0.01
Scn11aQ9R053 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC15.09■□□□□ 0.01
Scn11aQ9R053 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Gm38346-201ENSMUST00000192379 2639 ntBASIC15.09■□□□□ 0.01
Scn11aQ9R053 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Scn11aQ9R053 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0.01
Scn11aQ9R053 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Scn11aQ9R053 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
Scn11aQ9R053 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Scn11aQ9R053 Gm13408-201ENSMUST00000119822 798 ntBASIC15.08■□□□□ 0.01
Scn11aQ9R053 Gm13935-201ENSMUST00000121859 798 ntBASIC15.08■□□□□ 0.01
Scn11aQ9R053 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Scn11aQ9R053 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC15.08■□□□□ 0.01
Scn11aQ9R053 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC15.08■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 81.8 ms