Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim54Q9ERP3 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC14.05□□□□□ -0.16
Trim54Q9ERP3 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim54Q9ERP3 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim54Q9ERP3 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim54Q9ERP3 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim54Q9ERP3 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim54Q9ERP3 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim54Q9ERP3 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim54Q9ERP3 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim54Q9ERP3 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Snord83b-201ENSMUST00000104546 94 ntBASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Gm12749-201ENSMUST00000122138 1159 ntBASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Gm6082-201ENSMUST00000215204 454 ntBASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Gm42769-201ENSMUST00000198576 1659 ntBASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Trim54Q9ERP3 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Gm20482-202ENSMUST00000174729 825 ntBASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Gm21769-201ENSMUST00000211922 111 ntBASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Gm9176-201ENSMUST00000219955 1120 ntBASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 CT009713.10-201ENSMUST00000225013 1986 ntBASIC14.03□□□□□ -0.16
Trim54Q9ERP3 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim54Q9ERP3 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim54Q9ERP3 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim54Q9ERP3 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim54Q9ERP3 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
Trim54Q9ERP3 Gm5466-201ENSMUST00000119395 1890 ntBASIC14.02□□□□□ -0.16
Trim54Q9ERP3 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Trim54Q9ERP3 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim54Q9ERP3 Gm44207-201ENSMUST00000204568 1424 ntBASIC14.02□□□□□ -0.16
Trim54Q9ERP3 Gm10729-202ENSMUST00000193403 1375 ntBASIC14.02□□□□□ -0.17
Trim54Q9ERP3 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC14.02□□□□□ -0.17
Trim54Q9ERP3 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Trim54Q9ERP3 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC14.02□□□□□ -0.17
Trim54Q9ERP3 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trim54Q9ERP3 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC14.02□□□□□ -0.17
Trim54Q9ERP3 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Trim54Q9ERP3 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
Trim54Q9ERP3 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC14.02□□□□□ -0.17
Trim54Q9ERP3 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC14.02□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms