Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Cdipt-204ENSMUST00000206346 806 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Scn4aQ9ER60 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Gm12474-201ENSMUST00000122898 1410 ntTSL 2 BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Gm8342-201ENSMUST00000209839 757 ntBASIC17.18■□□□□ 0.34
Scn4aQ9ER60 BC106175-201ENSMUST00000218578 695 ntTSL 5 BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 4930449E01Rik-201ENSMUST00000022711 595 ntTSL 2 BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Olfr1350-201ENSMUST00000070985 927 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Gm10584-201ENSMUST00000207036 2628 ntBASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Gm43334-201ENSMUST00000197740 1318 ntBASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Scn4aQ9ER60 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Gm12179-201ENSMUST00000118344 1272 ntBASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Gm42816-201ENSMUST00000198433 325 ntBASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Gm18561-201ENSMUST00000206027 804 ntBASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Gm30978-201ENSMUST00000211581 1066 ntTSL 5 BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 AC112945.1-201ENSMUST00000226413 514 ntBASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Pgap2-201ENSMUST00000033292 1201 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Gm5537-201ENSMUST00000091117 1252 ntBASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Defa3-201ENSMUST00000098893 410 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Poc1a-209ENSMUST00000216228 1431 ntTSL 5 BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Gm26513-201ENSMUST00000181802 2489 ntBASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Spaca9-202ENSMUST00000124840 699 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Gm24248-201ENSMUST00000157321 322 ntBASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Gm4868-201ENSMUST00000164138 789 ntBASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Gm26134-201ENSMUST00000178484 110 ntBASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Selenos-204ENSMUST00000206044 911 ntTSL 3 BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 4933430L12Rik-201ENSMUST00000206788 1194 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Gm39397-201ENSMUST00000212331 228 ntTSL 5 BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 P2rx7-202ENSMUST00000086247 712 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Vmn1r44-201ENSMUST00000089420 1108 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Scn4aQ9ER60 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Gm20773-202ENSMUST00000193306 1341 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Gm11511-201ENSMUST00000118146 540 ntBASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Gm12337-201ENSMUST00000119634 400 ntBASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Gm13204-201ENSMUST00000120110 821 ntBASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Gm13117-201ENSMUST00000120894 691 ntBASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Fam187b-203ENSMUST00000129773 1213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Gm16553-201ENSMUST00000160490 716 ntTSL 3 BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Gm26647-201ENSMUST00000180816 1255 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Gm45592-201ENSMUST00000209605 1043 ntBASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Zmynd11-206ENSMUST00000110637 3770 ntTSL 5 BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Gm9768-201ENSMUST00000206007 2861 ntBASIC17.16■□□□□ 0.34
Scn4aQ9ER60 AC130823.1-201ENSMUST00000228929 1549 ntBASIC17.16■□□□□ 0.34
Scn4aQ9ER60 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Gm10461-201ENSMUST00000202073 4786 ntBASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Scn4aQ9ER60 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms