Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
Hmgb1P63158 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC14.3□□□□□ -0.12
Hmgb1P63158 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC14.3□□□□□ -0.12
Hmgb1P63158 Mir6392-201ENSMUST00000184924 108 ntBASIC14.3□□□□□ -0.12
Hmgb1P63158 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC14.3□□□□□ -0.12
Hmgb1P63158 Gm37917-201ENSMUST00000194711 392 ntBASIC14.3□□□□□ -0.12
Hmgb1P63158 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC14.3□□□□□ -0.12
Hmgb1P63158 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC14.3□□□□□ -0.12
Hmgb1P63158 AC125206.2-201ENSMUST00000217454 574 ntBASIC14.3□□□□□ -0.12
Hmgb1P63158 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Gm3052-202ENSMUST00000188254 2224 ntBASIC14.3□□□□□ -0.12
Hmgb1P63158 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb1P63158 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Hmgb1P63158 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC14.3□□□□□ -0.12
Hmgb1P63158 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC14.29□□□□□ -0.12
Hmgb1P63158 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
Hmgb1P63158 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Hmgb1P63158 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC14.29□□□□□ -0.12
Hmgb1P63158 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Hmgb1P63158 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Gm15429-201ENSMUST00000151268 798 ntBASIC14.29□□□□□ -0.12
Hmgb1P63158 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC14.29□□□□□ -0.12
Hmgb1P63158 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Hmgb1P63158 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 AC155286.1-201ENSMUST00000218632 448 ntBASIC14.29□□□□□ -0.12
Hmgb1P63158 Gm18624-201ENSMUST00000220966 658 ntBASIC14.29□□□□□ -0.12
Hmgb1P63158 AC154305.4-201ENSMUST00000224520 614 ntBASIC14.29□□□□□ -0.12
Hmgb1P63158 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Gm16372-201ENSMUST00000073088 450 ntBASIC14.29□□□□□ -0.12
Hmgb1P63158 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC14.29□□□□□ -0.12
Hmgb1P63158 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb1P63158 Gm43045-201ENSMUST00000198725 2095 ntBASIC14.29□□□□□ -0.12
Hmgb1P63158 Gm28323-201ENSMUST00000186817 2499 ntBASIC14.29□□□□□ -0.12
Hmgb1P63158 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Hmgb1P63158 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC14.28□□□□□ -0.12
Hmgb1P63158 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb1P63158 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb1P63158 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb1P63158 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb1P63158 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb1P63158 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb1P63158 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Hmgb1P63158 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC14.28□□□□□ -0.12
Hmgb1P63158 Gm16202-201ENSMUST00000117532 544 ntBASIC14.28□□□□□ -0.12
Hmgb1P63158 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb1P63158 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Hmgb1P63158 Cish-204ENSMUST00000168260 2742 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb1P63158 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Hmgb1P63158 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb1P63158 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC14.28□□□□□ -0.12
Hmgb1P63158 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC14.28□□□□□ -0.12
Hmgb1P63158 Olfr1227-ps1-201ENSMUST00000215627 928 ntBASIC14.28□□□□□ -0.12
Hmgb1P63158 Gm18165-201ENSMUST00000217426 928 ntBASIC14.28□□□□□ -0.12
Hmgb1P63158 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC14.28□□□□□ -0.12
Hmgb1P63158 AC238811.3-201ENSMUST00000225422 709 ntBASIC14.28□□□□□ -0.12
Hmgb1P63158 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb1P63158 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb1P63158 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb1P63158 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb1P63158 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb1P63158 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Hmgb1P63158 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Hmgb1P63158 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms