Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Cdh11P55288 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdh11P55288 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Cdh11P55288 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC11.84□□□□□ -0.51
Cdh11P55288 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Gm9002-201ENSMUST00000178437 499 ntBASIC11.84□□□□□ -0.51
Cdh11P55288 Mir7654-201ENSMUST00000185082 70 ntBASIC11.84□□□□□ -0.51
Cdh11P55288 Gm28911-201ENSMUST00000188837 117 ntBASIC11.84□□□□□ -0.51
Cdh11P55288 Gm37748-201ENSMUST00000194379 1140 ntBASIC11.84□□□□□ -0.51
Cdh11P55288 CT030657.3-201ENSMUST00000222707 1200 ntBASIC11.84□□□□□ -0.51
Cdh11P55288 AC155252.1-201ENSMUST00000226462 1208 ntBASIC11.84□□□□□ -0.51
Cdh11P55288 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Cdh11P55288 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Cdh11P55288 Nudt18-202ENSMUST00000228554 3619 ntBASIC11.84□□□□□ -0.51
Cdh11P55288 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cdh11P55288 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
Cdh11P55288 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC11.83□□□□□ -0.51
Cdh11P55288 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC11.83□□□□□ -0.51
Cdh11P55288 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Cdh11P55288 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC11.83□□□□□ -0.52
Cdh11P55288 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Gm12960-201ENSMUST00000120017 1066 ntBASIC11.83□□□□□ -0.52
Cdh11P55288 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC11.83□□□□□ -0.52
Cdh11P55288 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC11.83□□□□□ -0.52
Cdh11P55288 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC11.83□□□□□ -0.52
Cdh11P55288 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Cdh11P55288 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC11.83□□□□□ -0.52
Cdh11P55288 Gm24420-201ENSMUST00000176676 59 ntBASIC11.83□□□□□ -0.52
Cdh11P55288 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC11.83□□□□□ -0.52
Cdh11P55288 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC11.83□□□□□ -0.52
Cdh11P55288 Cdk7-205ENSMUST00000225990 1159 ntBASIC11.83□□□□□ -0.52
Cdh11P55288 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Cdh11P55288 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Cdh11P55288 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Cdh11P55288 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Gm43273-201ENSMUST00000199649 2594 ntBASIC11.83□□□□□ -0.52
Cdh11P55288 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Gm28323-201ENSMUST00000186817 2499 ntBASIC11.83□□□□□ -0.52
Cdh11P55288 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Gm7049-201ENSMUST00000223520 1712 ntBASIC11.83□□□□□ -0.52
Cdh11P55288 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdh11P55288 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdh11P55288 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdh11P55288 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdh11P55288 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdh11P55288 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdh11P55288 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdh11P55288 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdh11P55288 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdh11P55288 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdh11P55288 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms