Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm37751-201ENSMUST00000192440 1198 ntBASIC10.22□□□□□ -0.77
Hoxd3P09027 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC10.22□□□□□ -0.77
Hoxd3P09027 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC10.22□□□□□ -0.77
Hoxd3P09027 Gm44069-201ENSMUST00000204898 506 ntBASIC10.22□□□□□ -0.77
Hoxd3P09027 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Hoxd3P09027 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC10.22□□□□□ -0.77
Hoxd3P09027 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC10.22□□□□□ -0.77
Hoxd3P09027 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Gm12846-201ENSMUST00000120431 1373 ntBASIC10.22□□□□□ -0.77
Hoxd3P09027 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hoxd3P09027 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hoxd3P09027 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC10.21□□□□□ -0.77
Hoxd3P09027 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hoxd3P09027 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hoxd3P09027 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hoxd3P09027 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC10.21□□□□□ -0.77
Hoxd3P09027 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hoxd3P09027 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hoxd3P09027 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hoxd3P09027 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hoxd3P09027 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC10.21□□□□□ -0.77
Hoxd3P09027 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hoxd3P09027 AC121805.2-201ENSMUST00000218808 2538 ntBASIC10.21□□□□□ -0.77
Hoxd3P09027 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hoxd3P09027 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
Hoxd3P09027 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hoxd3P09027 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC10.21□□□□□ -0.77
Hoxd3P09027 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC10.21□□□□□ -0.77
Hoxd3P09027 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Hoxd3P09027 Gm17420-201ENSMUST00000164753 153 ntBASIC10.21□□□□□ -0.77
Hoxd3P09027 Vmn1r60-201ENSMUST00000173782 1007 ntAPPRIS P1 BASIC10.21□□□□□ -0.77
Hoxd3P09027 Gm37424-201ENSMUST00000191727 561 ntBASIC10.21□□□□□ -0.77
Hoxd3P09027 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC10.21□□□□□ -0.77
Hoxd3P09027 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC10.21□□□□□ -0.77
Hoxd3P09027 Gm37497-201ENSMUST00000195830 798 ntBASIC10.21□□□□□ -0.77
Hoxd3P09027 Gm7439-201ENSMUST00000214053 835 ntBASIC10.21□□□□□ -0.77
Hoxd3P09027 AC134254.1-201ENSMUST00000221362 167 ntBASIC10.21□□□□□ -0.77
Hoxd3P09027 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Hoxd3P09027 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.77
Hoxd3P09027 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hoxd3P09027 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Hoxd3P09027 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hoxd3P09027 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC10.21□□□□□ -0.78
Hoxd3P09027 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC10.21□□□□□ -0.78
Hoxd3P09027 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC10.21□□□□□ -0.78
Hoxd3P09027 4833412K13Rik-201ENSMUST00000195509 1479 ntBASIC10.21□□□□□ -0.78
Hoxd3P09027 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.78
Hoxd3P09027 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hoxd3P09027 Gm45684-201ENSMUST00000210244 1571 ntBASIC10.21□□□□□ -0.78
Hoxd3P09027 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hoxd3P09027 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Hoxd3P09027 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Hoxd3P09027 Gm10339-203ENSMUST00000225409 1671 ntBASIC10.21□□□□□ -0.78
Hoxd3P09027 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hoxd3P09027 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hoxd3P09027 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hoxd3P09027 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hoxd3P09027 Gm12940-202ENSMUST00000137236 1970 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Hoxd3P09027 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hoxd3P09027 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hoxd3P09027 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Hoxd3P09027 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC10.21□□□□□ -0.78
Hoxd3P09027 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC10.21□□□□□ -0.78
Hoxd3P09027 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hoxd3P09027 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hoxd3P09027 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
Hoxd3P09027 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hoxd3P09027 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hoxd3P09027 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hoxd3P09027 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Hoxd3P09027 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hoxd3P09027 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hoxd3P09027 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hoxd3P09027 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Hoxd3P09027 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Hoxd3P09027 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hoxd3P09027 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hoxd3P09027 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Hoxd3P09027 Gm1335-201ENSMUST00000121653 386 ntBASIC10.2□□□□□ -0.78
Hoxd3P09027 Olfr1171-ps1-202ENSMUST00000150178 1398 ntTSL 3 BASIC10.2□□□□□ -0.78
Hoxd3P09027 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Hoxd3P09027 Gm5277-201ENSMUST00000164923 556 ntBASIC10.2□□□□□ -0.78
Hoxd3P09027 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC10.2□□□□□ -0.78
Hoxd3P09027 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Hoxd3P09027 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC10.2□□□□□ -0.78
Hoxd3P09027 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms