Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC15.31■□□□□ 0.04
Col3a1P08121 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC15.31■□□□□ 0.04
Col3a1P08121 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Col3a1P08121 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC15.31■□□□□ 0.04
Col3a1P08121 Gm28882-201ENSMUST00000185504 314 ntBASIC15.31■□□□□ 0.04
Col3a1P08121 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC15.31■□□□□ 0.04
Col3a1P08121 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC15.31■□□□□ 0.04
Col3a1P08121 Gm18212-201ENSMUST00000211678 889 ntBASIC15.31■□□□□ 0.04
Col3a1P08121 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col3a1P08121 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
Col3a1P08121 Gm9333-201ENSMUST00000205452 1323 ntBASIC15.3■□□□□ 0.04
Col3a1P08121 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Col3a1P08121 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC15.3■□□□□ 0.04
Col3a1P08121 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Col3a1P08121 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC15.3■□□□□ 0.04
Col3a1P08121 Gm6963-201ENSMUST00000147879 379 ntBASIC15.3■□□□□ 0.04
Col3a1P08121 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC15.3■□□□□ 0.04
Col3a1P08121 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Col3a1P08121 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Gm10076-201ENSMUST00000073238 384 ntBASIC15.3■□□□□ 0.04
Col3a1P08121 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Gm37861-201ENSMUST00000193534 2869 ntBASIC15.3■□□□□ 0.04
Col3a1P08121 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
Col3a1P08121 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Col3a1P08121 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC15.3■□□□□ 0.04
Col3a1P08121 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Gm45605-201ENSMUST00000210265 4269 ntBASIC15.3■□□□□ 0.04
Col3a1P08121 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col3a1P08121 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC15.29■□□□□ 0.04
Col3a1P08121 AC122197.2-201ENSMUST00000219196 1635 ntBASIC15.29■□□□□ 0.04
Col3a1P08121 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col3a1P08121 Gm43858-201ENSMUST00000199418 1778 ntBASIC15.29■□□□□ 0.04
Col3a1P08121 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Col3a1P08121 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Col3a1P08121 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col3a1P08121 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Col3a1P08121 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Col3a1P08121 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC15.29■□□□□ 0.04
Col3a1P08121 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC15.29■□□□□ 0.04
Col3a1P08121 Gm26361-201ENSMUST00000158868 186 ntBASIC15.29■□□□□ 0.04
Col3a1P08121 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Col3a1P08121 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC15.29■□□□□ 0.04
Col3a1P08121 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC15.29■□□□□ 0.04
Col3a1P08121 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Col3a1P08121 Gstp-ps-201ENSMUST00000195526 631 ntBASIC15.29■□□□□ 0.04
Col3a1P08121 Gm42937-201ENSMUST00000197360 752 ntBASIC15.29■□□□□ 0.04
Col3a1P08121 Gm8913-201ENSMUST00000209491 641 ntBASIC15.29■□□□□ 0.04
Col3a1P08121 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC15.29■□□□□ 0.04
Col3a1P08121 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col3a1P08121 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col3a1P08121 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Col3a1P08121 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col3a1P08121 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col3a1P08121 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col3a1P08121 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col3a1P08121 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC15.29■□□□□ 0.04
Col3a1P08121 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col3a1P08121 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col3a1P08121 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col3a1P08121 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
Col3a1P08121 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col3a1P08121 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC15.28■□□□□ 0.04
Col3a1P08121 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Col3a1P08121 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Col3a1P08121 Gm13996-201ENSMUST00000118456 430 ntBASIC15.28■□□□□ 0.04
Col3a1P08121 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms