Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Gm16202-201ENSMUST00000117532 544 ntBASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Tyms-ps-201ENSMUST00000219550 915 ntBASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC13.63□□□□□ -0.23
Hmgb4Q6P8W9 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Gm7899-201ENSMUST00000192935 1897 ntBASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Gm6447-201ENSMUST00000118905 835 ntBASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Gm26927-201ENSMUST00000182385 965 ntBASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Gm27243-201ENSMUST00000183964 521 ntBASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Gm43133-201ENSMUST00000197472 463 ntBASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Gm43118-201ENSMUST00000199149 775 ntBASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Snora73a-201ENSMUST00000082453 205 ntBASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Hmgb4Q6P8W9 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb4Q6P8W9 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb4Q6P8W9 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb4Q6P8W9 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb4Q6P8W9 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb4Q6P8W9 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb4Q6P8W9 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC13.61□□□□□ -0.23
Hmgb4Q6P8W9 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Hmgb4Q6P8W9 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms