Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Scn11aQ9R053 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Gm45342-201ENSMUST00000210903 1363 ntBASIC15.17■□□□□ 0.02
Scn11aQ9R053 Gm45638-201ENSMUST00000211507 2878 ntBASIC15.17■□□□□ 0.02
Scn11aQ9R053 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC15.17■□□□□ 0.02
Scn11aQ9R053 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Gm23699-201ENSMUST00000158835 135 ntBASIC15.17■□□□□ 0.02
Scn11aQ9R053 Gm19187-201ENSMUST00000206781 892 ntBASIC15.17■□□□□ 0.02
Scn11aQ9R053 Gm7600-201ENSMUST00000209657 785 ntBASIC15.17■□□□□ 0.02
Scn11aQ9R053 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Scn11aQ9R053 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Scn11aQ9R053 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC15.16■□□□□ 0.02
Scn11aQ9R053 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Gm10076-201ENSMUST00000073238 384 ntBASIC15.16■□□□□ 0.02
Scn11aQ9R053 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Scn11aQ9R053 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Scn11aQ9R053 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Matn2-206ENSMUST00000228570 2798 ntBASIC15.15■□□□□ 0.02
Scn11aQ9R053 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scn11aQ9R053 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Scn11aQ9R053 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC15.15■□□□□ 0.02
Scn11aQ9R053 Gm18734-201ENSMUST00000172937 808 ntBASIC15.15■□□□□ 0.02
Scn11aQ9R053 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Gm37666-201ENSMUST00000194110 866 ntBASIC15.15■□□□□ 0.02
Scn11aQ9R053 Gm44958-201ENSMUST00000203734 736 ntBASIC15.15■□□□□ 0.02
Scn11aQ9R053 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Scn11aQ9R053 AC125486.1-201ENSMUST00000218701 320 ntBASIC15.15■□□□□ 0.02
Scn11aQ9R053 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC15.15■□□□□ 0.02
Scn11aQ9R053 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Gm5421-201ENSMUST00000181698 2354 ntBASIC15.15■□□□□ 0.02
Scn11aQ9R053 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC15.15■□□□□ 0.02
Scn11aQ9R053 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Scn11aQ9R053 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Scn11aQ9R053 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms