Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scn4aQ9ER60 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scn4aQ9ER60 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Scn4aQ9ER60 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 4732414G09Rik-202ENSMUST00000180695 408 ntTSL 3 BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Mir99ahg-209ENSMUST00000182820 835 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Gm45613-201ENSMUST00000210718 443 ntTSL 3 BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 AC156568.1-201ENSMUST00000223018 712 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 AC137950.2-202ENSMUST00000227150 1635 ntBASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Trav10d-201ENSMUST00000103646 406 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Gm15703-201ENSMUST00000120250 880 ntBASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Gm3329-201ENSMUST00000159873 556 ntBASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Gm44958-201ENSMUST00000203734 736 ntBASIC17.26■□□□□ 0.35
Scn4aQ9ER60 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 CT009489.1-201ENSMUST00000227740 1893 ntBASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Gm9135-201ENSMUST00000182963 990 ntBASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Gm8756-201ENSMUST00000183250 929 ntBASIC17.25■□□□□ 0.35
Scn4aQ9ER60 3110009M11Rik-201ENSMUST00000208647 892 ntBASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Tprg-201ENSMUST00000056087 1084 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Zfp1-202ENSMUST00000211926 1409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn4aQ9ER60 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Rbfox1-202ENSMUST00000115841 1191 ntTSL 5 BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 1700006J14Rik-204ENSMUST00000161511 574 ntTSL 3 BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Rpl13-ps4-201ENSMUST00000194776 628 ntBASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 AC165154.1-201ENSMUST00000226661 340 ntBASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 n-R5s185-201ENSMUST00000083953 119 ntBASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Gm13910-201ENSMUST00000121752 1428 ntBASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Gm14193-201ENSMUST00000105067 153 ntBASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Gm13700-201ENSMUST00000118624 1128 ntBASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Gm16240-201ENSMUST00000161924 614 ntTSL 2 BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Gm11942-201ENSMUST00000180255 345 ntBASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Gm45085-201ENSMUST00000209100 441 ntBASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Gm13306-201ENSMUST00000098122 418 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn4aQ9ER60 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Lonp2-207ENSMUST00000163987 1556 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn4aQ9ER60 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC17.23■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms