Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Gm8805-201ENSMUST00000117848 313 ntBASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Snora78-201ENSMUST00000158630 128 ntBASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Gm6458-201ENSMUST00000211573 635 ntBASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 AC140451.2-201ENSMUST00000228030 664 ntBASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Vps28Q9D1C8 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Gm12742-201ENSMUST00000117326 410 ntBASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Gm1335-201ENSMUST00000121653 386 ntBASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Vps28Q9D1C8 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Gm10339-203ENSMUST00000225409 1671 ntBASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Gm12957-201ENSMUST00000117835 377 ntBASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Trav4d-2-201ENSMUST00000120914 335 ntBASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Gm8565-201ENSMUST00000183259 1014 ntBASIC13.34□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 91.6 ms