Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Gm25214-201ENSMUST00000104573 129 ntBASIC18.3■□□□□ 0.52
Usp47Q8BY87 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Gm37259-201ENSMUST00000193903 849 ntBASIC18.3■□□□□ 0.52
Usp47Q8BY87 Gm3961-201ENSMUST00000204425 994 ntBASIC18.3■□□□□ 0.52
Usp47Q8BY87 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC18.3■□□□□ 0.52
Usp47Q8BY87 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Usp47Q8BY87 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp47Q8BY87 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Usp47Q8BY87 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC18.29■□□□□ 0.52
Usp47Q8BY87 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp47Q8BY87 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp47Q8BY87 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp47Q8BY87 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC18.29■□□□□ 0.52
Usp47Q8BY87 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp47Q8BY87 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC18.29■□□□□ 0.52
Usp47Q8BY87 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp47Q8BY87 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC18.29■□□□□ 0.52
Usp47Q8BY87 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Usp47Q8BY87 Gm37489-201ENSMUST00000191883 159 ntBASIC18.29■□□□□ 0.52
Usp47Q8BY87 Gm38341-201ENSMUST00000195357 515 ntBASIC18.29■□□□□ 0.52
Usp47Q8BY87 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC18.29■□□□□ 0.52
Usp47Q8BY87 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC18.29■□□□□ 0.52
Usp47Q8BY87 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp47Q8BY87 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp47Q8BY87 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp47Q8BY87 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp47Q8BY87 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Gm7789-202ENSMUST00000211273 1400 ntBASIC18.28■□□□□ 0.52
Usp47Q8BY87 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Usp47Q8BY87 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp47Q8BY87 Gm42863-201ENSMUST00000197875 2958 ntBASIC18.27■□□□□ 0.52
Usp47Q8BY87 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Usp47Q8BY87 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp47Q8BY87 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp47Q8BY87 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Usp47Q8BY87 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Usp47Q8BY87 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp47Q8BY87 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Usp47Q8BY87 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC18.27■□□□□ 0.51
Usp47Q8BY87 Ntrk2-209ENSMUST00000225950 2640 ntBASIC18.27■□□□□ 0.51
Usp47Q8BY87 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp47Q8BY87 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp47Q8BY87 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp47Q8BY87 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Usp47Q8BY87 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp47Q8BY87 Gm13736-201ENSMUST00000119272 253 ntBASIC18.27■□□□□ 0.51
Usp47Q8BY87 Gm13350-201ENSMUST00000120519 479 ntBASIC18.27■□□□□ 0.51
Usp47Q8BY87 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC18.27■□□□□ 0.51
Usp47Q8BY87 Gm7783-201ENSMUST00000204795 781 ntBASIC18.27■□□□□ 0.51
Usp47Q8BY87 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC18.27■□□□□ 0.51
Usp47Q8BY87 AC167013.1-201ENSMUST00000228592 202 ntBASIC18.27■□□□□ 0.51
Usp47Q8BY87 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp47Q8BY87 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC18.27■□□□□ 0.51
Usp47Q8BY87 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp47Q8BY87 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Usp47Q8BY87 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp47Q8BY87 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp47Q8BY87 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp47Q8BY87 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Usp47Q8BY87 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Usp47Q8BY87 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp47Q8BY87 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp47Q8BY87 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC18.26■□□□□ 0.51
Usp47Q8BY87 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Usp47Q8BY87 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Usp47Q8BY87 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp47Q8BY87 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp47Q8BY87 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Usp47Q8BY87 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp47Q8BY87 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp47Q8BY87 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Usp47Q8BY87 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Usp47Q8BY87 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC18.26■□□□□ 0.51
Usp47Q8BY87 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC18.26■□□□□ 0.51
Usp47Q8BY87 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Usp47Q8BY87 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms