Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Mir8109-201ENSMUST00000184375 117 ntBASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Gm43822-201ENSMUST00000200285 476 ntBASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Gm17823-201ENSMUST00000217830 1006 ntBASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Gm7002-201ENSMUST00000221386 2165 ntBASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb4Q6P8W9 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Gm8805-201ENSMUST00000117848 313 ntBASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Gm13123-201ENSMUST00000122173 492 ntBASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Gm7029-201ENSMUST00000173226 450 ntBASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Gm27501-201ENSMUST00000183599 107 ntBASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 AC133598.1-201ENSMUST00000224327 660 ntBASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb4Q6P8W9 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Gm8706-201ENSMUST00000197372 1491 ntBASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Gm25927-201ENSMUST00000175058 117 ntBASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Gm38266-201ENSMUST00000194931 421 ntBASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Gm9257-201ENSMUST00000221254 232 ntBASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 AC173210.1-201ENSMUST00000222341 1131 ntBASIC13.64□□□□□ -0.23
Hmgb4Q6P8W9 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms