Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC12.42□□□□□ -0.42
Lire1P11260 AC125350.2-201ENSMUST00000224737 727 ntBASIC12.42□□□□□ -0.42
Lire1P11260 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC12.42□□□□□ -0.42
Lire1P11260 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Lire1P11260 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC12.42□□□□□ -0.42
Lire1P11260 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Lire1P11260 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC12.41□□□□□ -0.42
Lire1P11260 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Lire1P11260 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC12.41□□□□□ -0.42
Lire1P11260 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC12.41□□□□□ -0.42
Lire1P11260 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Lire1P11260 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC12.41□□□□□ -0.42
Lire1P11260 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC12.41□□□□□ -0.42
Lire1P11260 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC12.41□□□□□ -0.42
Lire1P11260 Gm4804-201ENSMUST00000182234 999 ntBASIC12.41□□□□□ -0.42
Lire1P11260 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC12.41□□□□□ -0.42
Lire1P11260 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC12.41□□□□□ -0.42
Lire1P11260 AC238811.3-201ENSMUST00000225422 709 ntBASIC12.41□□□□□ -0.42
Lire1P11260 AC154806.6-201ENSMUST00000228192 202 ntBASIC12.41□□□□□ -0.42
Lire1P11260 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lire1P11260 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC12.41□□□□□ -0.42
Lire1P11260 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
Lire1P11260 Gm43375-201ENSMUST00000196705 2480 ntBASIC12.4□□□□□ -0.42
Lire1P11260 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC12.4□□□□□ -0.42
Lire1P11260 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Lire1P11260 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Lire1P11260 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Gm12960-201ENSMUST00000120017 1066 ntBASIC12.4□□□□□ -0.42
Lire1P11260 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC12.4□□□□□ -0.42
Lire1P11260 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC12.4□□□□□ -0.42
Lire1P11260 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC12.4□□□□□ -0.42
Lire1P11260 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC12.4□□□□□ -0.42
Lire1P11260 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC12.4□□□□□ -0.42
Lire1P11260 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC12.4□□□□□ -0.42
Lire1P11260 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC12.4□□□□□ -0.42
Lire1P11260 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Lire1P11260 AC139580.1-202ENSMUST00000223574 928 ntBASIC12.4□□□□□ -0.42
Lire1P11260 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC12.4□□□□□ -0.42
Lire1P11260 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC12.4□□□□□ -0.42
Lire1P11260 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms