Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm6644-201ENSMUST00000186507 951 ntBASIC17.31■□□□□ 0.36
Scn4aQ9ER60 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Gm19931-201ENSMUST00000198920 368 ntBASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Isoc2b-205ENSMUST00000208816 820 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Gm45310-201ENSMUST00000210436 275 ntBASIC17.31■□□□□ 0.36
Scn4aQ9ER60 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 AC158605.1-201ENSMUST00000156803 764 ntTSL 3 BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Gm22146-201ENSMUST00000157397 288 ntBASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Gm18801-201ENSMUST00000186616 536 ntBASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Gm18776-201ENSMUST00000188833 654 ntBASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Gm17213-201ENSMUST00000165161 1360 ntBASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Sec13-201ENSMUST00000032440 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Scn4aQ9ER60 Gm2420-202ENSMUST00000202224 2249 ntBASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Cisd3-203ENSMUST00000107585 586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Gm12036-201ENSMUST00000120008 530 ntBASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Gm18198-201ENSMUST00000204986 1551 ntBASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Scn4aQ9ER60 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Gm11663-201ENSMUST00000117888 290 ntBASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Gm13530-201ENSMUST00000134014 390 ntTSL 2 BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Gm12906-201ENSMUST00000154610 441 ntBASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Gm28901-201ENSMUST00000188810 474 ntTSL 5 BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Gm6390-201ENSMUST00000215034 589 ntBASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Gm10728-201ENSMUST00000194292 1829 ntBASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Tnfrsf9-203ENSMUST00000105671 1278 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Gm45716-203ENSMUST00000153734 644 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Gm17192-201ENSMUST00000169031 511 ntBASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Gm36982-201ENSMUST00000193796 1128 ntBASIC17.28■□□□□ 0.36
Scn4aQ9ER60 CT030652.1-201ENSMUST00000227377 1235 ntBASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Tnfrsf9-202ENSMUST00000060901 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn4aQ9ER60 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scn4aQ9ER60 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scn4aQ9ER60 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scn4aQ9ER60 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Scn4aQ9ER60 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scn4aQ9ER60 Gm24844-201ENSMUST00000158679 127 ntBASIC17.27■□□□□ 0.36
Scn4aQ9ER60 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC17.27■□□□□ 0.36
Scn4aQ9ER60 Mrto4-ps2-201ENSMUST00000164169 549 ntBASIC17.27■□□□□ 0.36
Scn4aQ9ER60 Gm3150-201ENSMUST00000166418 204 ntBASIC17.27■□□□□ 0.36
Scn4aQ9ER60 Gm43969-201ENSMUST00000204833 535 ntBASIC17.27■□□□□ 0.36
Scn4aQ9ER60 4930555K19Rik-201ENSMUST00000060066 171 ntBASIC17.27■□□□□ 0.36
Scn4aQ9ER60 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scn4aQ9ER60 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Scn4aQ9ER60 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
Scn4aQ9ER60 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scn4aQ9ER60 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scn4aQ9ER60 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms