Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Gm12012-201ENSMUST00000118857 1066 ntBASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Gm16296-201ENSMUST00000159905 325 ntBASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC17.81■□□□□ 0.44
Usp40Q8BWR4 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Gm14371-201ENSMUST00000138925 1518 ntBASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC17.81■□□□□ 0.44
Usp40Q8BWR4 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Gm2606-201ENSMUST00000100754 1002 ntBASIC17.8■□□□□ 0.44
Usp40Q8BWR4 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Gm12058-201ENSMUST00000118614 437 ntBASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Gm14921-201ENSMUST00000118643 908 ntBASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Gm13736-201ENSMUST00000119272 253 ntBASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Gm7293-201ENSMUST00000216682 1007 ntBASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Gm18615-201ENSMUST00000222919 1031 ntBASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usp40Q8BWR4 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Gm44405-201ENSMUST00000198952 126 ntBASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usp40Q8BWR4 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms