Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 AC154747.3-201ENSMUST00000224471 3470 ntBASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Gm16342-201ENSMUST00000124025 1025 ntBASIC12.32□□□□□ -0.44
Trim3Q9R1R2 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC12.32□□□□□ -0.44
Trim3Q9R1R2 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trim3Q9R1R2 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Gm38223-201ENSMUST00000194484 695 ntBASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 AC125117.1-201ENSMUST00000228121 468 ntBASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Gm43463-201ENSMUST00000195967 1803 ntBASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Gm45743-201ENSMUST00000212701 2795 ntBASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trim3Q9R1R2 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 AC122314.1-201ENSMUST00000223056 2239 ntBASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Gm43423-201ENSMUST00000198390 2094 ntBASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Gm13730-201ENSMUST00000121036 1462 ntBASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Gm15371-201ENSMUST00000117057 784 ntBASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 63.4 ms