Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Tmed9-203ENSMUST00000224741 1450 ntBASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Gm6161-201ENSMUST00000121942 1102 ntBASIC14.15□□□□□ -0.14
Trim54Q9ERP3 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Gm6254-201ENSMUST00000168178 1072 ntBASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Gm6153-201ENSMUST00000172004 1058 ntBASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Gm37042-201ENSMUST00000193816 581 ntBASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Gm4959-201ENSMUST00000197271 1044 ntBASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Gm5641-202ENSMUST00000198699 1080 ntBASIC14.15□□□□□ -0.14
Trim54Q9ERP3 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim54Q9ERP3 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Il17rd-203ENSMUST00000225146 3366 ntBASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Mospd4-201ENSMUST00000180618 576 ntBASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Gm18584-201ENSMUST00000203098 964 ntBASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Gm18056-201ENSMUST00000207670 568 ntBASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Gm18061-201ENSMUST00000208350 562 ntBASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Gm18063-201ENSMUST00000208529 568 ntBASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Gm18052-201ENSMUST00000208750 559 ntBASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Gm7046-201ENSMUST00000221351 977 ntBASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim54Q9ERP3 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Gm4986-201ENSMUST00000119731 549 ntBASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC14.13□□□□□ -0.15
Trim54Q9ERP3 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms