Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Ppm1l-201ENSMUST00000029355 9417 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Gm13612-201ENSMUST00000119276 390 ntBASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Gm17420-201ENSMUST00000164753 153 ntBASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Gm9124-201ENSMUST00000191789 1092 ntBASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Gm9113-201ENSMUST00000192510 1018 ntBASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Gm9131-201ENSMUST00000193557 1089 ntBASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Gm9121-201ENSMUST00000193749 1071 ntBASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Gm40466-201ENSMUST00000212174 422 ntBASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Gm9924-202ENSMUST00000192760 2311 ntBASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Gm6152-201ENSMUST00000151704 340 ntBASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Gm42442-201ENSMUST00000197951 1133 ntBASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cdc40Q9DC48 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
Cdc40Q9DC48 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Cdc40Q9DC48 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.47
Cdc40Q9DC48 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
Cdc40Q9DC48 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Cdc40Q9DC48 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 64.2 ms