Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 AC153366.2-201ENSMUST00000219461 1984 ntBASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Gm12138-201ENSMUST00000122180 951 ntBASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Wdyhv1-206ENSMUST00000227142 786 ntBASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ddx56Q9D0R4 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Gm38297-201ENSMUST00000195122 1057 ntBASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Gm9794-201ENSMUST00000202370 423 ntBASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Gm6458-201ENSMUST00000211573 635 ntBASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Gm8598-201ENSMUST00000221184 836 ntBASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ddx56Q9D0R4 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Gm15222-202ENSMUST00000228667 1726 ntBASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Gm12960-201ENSMUST00000120017 1066 ntBASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ddx56Q9D0R4 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC13.73□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms