Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Gm9299-201ENSMUST00000206392 1140 ntBASIC15.4■□□□□ 0.06
Limch1Q3UH68 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Limch1Q3UH68 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Gm9755-201ENSMUST00000032981 1356 ntBASIC15.39■□□□□ 0.05
Limch1Q3UH68 Gm13612-201ENSMUST00000119276 390 ntBASIC15.39■□□□□ 0.05
Limch1Q3UH68 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Gm24196-201ENSMUST00000179161 110 ntBASIC15.39■□□□□ 0.05
Limch1Q3UH68 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Gm44397-201ENSMUST00000195950 113 ntBASIC15.39■□□□□ 0.05
Limch1Q3UH68 Gm42442-201ENSMUST00000197951 1133 ntBASIC15.39■□□□□ 0.05
Limch1Q3UH68 Gm19931-201ENSMUST00000198920 368 ntBASIC15.39■□□□□ 0.05
Limch1Q3UH68 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Gm38671-201ENSMUST00000200573 130 ntBASIC15.39■□□□□ 0.05
Limch1Q3UH68 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 AC122459.1-201ENSMUST00000228373 885 ntBASIC15.39■□□□□ 0.05
Limch1Q3UH68 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC15.39■□□□□ 0.05
Limch1Q3UH68 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC15.38■□□□□ 0.05
Limch1Q3UH68 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Gm6447-201ENSMUST00000118905 835 ntBASIC15.38■□□□□ 0.05
Limch1Q3UH68 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC15.38■□□□□ 0.05
Limch1Q3UH68 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC15.38■□□□□ 0.05
Limch1Q3UH68 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC15.38■□□□□ 0.05
Limch1Q3UH68 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Limch1Q3UH68 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Limch1Q3UH68 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Limch1Q3UH68 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Limch1Q3UH68 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Limch1Q3UH68 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Limch1Q3UH68 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Limch1Q3UH68 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
Limch1Q3UH68 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Limch1Q3UH68 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Limch1Q3UH68 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Limch1Q3UH68 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC15.37■□□□□ 0.05
Limch1Q3UH68 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Limch1Q3UH68 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Limch1Q3UH68 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Limch1Q3UH68 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Limch1Q3UH68 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Limch1Q3UH68 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms