Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Gm9755-201ENSMUST00000032981 1356 ntBASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Mir1894-201ENSMUST00000122802 81 ntBASIC14.25□□□□□ -0.13
Chmp6P0C0A3 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Gm6152-201ENSMUST00000151704 340 ntBASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Gm17794-201ENSMUST00000220252 955 ntBASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Gm27194-201ENSMUST00000175753 2936 ntBASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chmp6P0C0A3 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Gm7287-201ENSMUST00000205267 602 ntBASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Gm44799-201ENSMUST00000207639 1202 ntBASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Gm7067-201ENSMUST00000207698 1249 ntBASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Gm5035-201ENSMUST00000215581 927 ntBASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Gm8131-201ENSMUST00000213783 1570 ntBASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chmp6P0C0A3 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Gm5303-201ENSMUST00000117943 1252 ntBASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Gm11400-201ENSMUST00000120853 1214 ntBASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC14.23□□□□□ -0.13
Chmp6P0C0A3 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Chmp6P0C0A3 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC14.23□□□□□ -0.13
Chmp6P0C0A3 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Gm5186-201ENSMUST00000218781 920 ntBASIC14.23□□□□□ -0.13
Chmp6P0C0A3 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms