Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC10.8□□□□□ -0.68
Hmgb3O54879 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC10.8□□□□□ -0.68
Hmgb3O54879 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC10.8□□□□□ -0.68
Hmgb3O54879 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC10.8□□□□□ -0.68
Hmgb3O54879 Gm18737-201ENSMUST00000173594 937 ntBASIC10.8□□□□□ -0.68
Hmgb3O54879 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC10.8□□□□□ -0.68
Hmgb3O54879 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC10.8□□□□□ -0.68
Hmgb3O54879 Ighv1-25-201ENSMUST00000195638 345 ntBASIC10.8□□□□□ -0.68
Hmgb3O54879 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Hmgb3O54879 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
Hmgb3O54879 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC10.8□□□□□ -0.68
Hmgb3O54879 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
Hmgb3O54879 Bcl2l11-205ENSMUST00000110341 5036 ntAPPRIS P4 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Gm43075-201ENSMUST00000198613 3905 ntBASIC10.8□□□□□ -0.68
Hmgb3O54879 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Hmgb3O54879 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC10.8□□□□□ -0.68
Hmgb3O54879 Lama4-201ENSMUST00000019992 6046 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Hmgb3O54879 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Hmgb3O54879 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Trip11-201ENSMUST00000021605 9873 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 AC241621.2-201ENSMUST00000223991 2151 ntBASIC10.79□□□□□ -0.68
Hmgb3O54879 Tacc2-203ENSMUST00000084513 9029 ntAPPRIS P4 TSL 5 BASIC10.79□□□□□ -0.68
Hmgb3O54879 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC10.79□□□□□ -0.68
Hmgb3O54879 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Hmgb3O54879 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC10.79□□□□□ -0.68
Hmgb3O54879 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC10.79□□□□□ -0.68
Hmgb3O54879 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC10.79□□□□□ -0.68
Hmgb3O54879 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC10.79□□□□□ -0.68
Hmgb3O54879 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Hmgb3O54879 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Hmgb3O54879 Gm10459-201ENSMUST00000202708 1155 ntBASIC10.79□□□□□ -0.68
Hmgb3O54879 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Hmgb3O54879 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC10.79□□□□□ -0.68
Hmgb3O54879 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Myh13-203ENSMUST00000180845 5991 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Hmgb3O54879 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC10.79□□□□□ -0.68
Hmgb3O54879 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC10.79□□□□□ -0.68
Hmgb3O54879 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Tti2-201ENSMUST00000098842 5039 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Hmgb3O54879 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Phf8-211ENSMUST00000168501 6359 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Hmgb3O54879 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Gprin2-203ENSMUST00000226613 10354 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Hmgb3O54879 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Lamb1-201ENSMUST00000002979 5784 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Gm17271-201ENSMUST00000165535 355 ntBASIC10.78□□□□□ -0.68
Hmgb3O54879 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC10.78□□□□□ -0.68
Hmgb3O54879 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Hmgb3O54879 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC10.78□□□□□ -0.68
Hmgb3O54879 AC164629.2-201ENSMUST00000217916 270 ntBASIC10.78□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 105.3 ms