Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Gm12537-201ENSMUST00000119266 1002 ntBASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Gm12070-201ENSMUST00000119551 1002 ntBASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Gm12671-201ENSMUST00000119978 1002 ntBASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Gm13292-201ENSMUST00000120014 1000 ntBASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Gm12403-201ENSMUST00000121384 959 ntBASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Gm10359-201ENSMUST00000180167 1002 ntBASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Gm12033-201ENSMUST00000180654 1002 ntBASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Gm5559-201ENSMUST00000180755 1002 ntBASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Gm4335-201ENSMUST00000182581 1004 ntBASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 AC140451.2-201ENSMUST00000228030 664 ntBASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Gm28386-201ENSMUST00000189147 1849 ntBASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cdc40Q9DC48 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Gm13050-201ENSMUST00000122149 1345 ntBASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Mir874-201ENSMUST00000104769 76 ntBASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Gm8062-201ENSMUST00000139696 444 ntBASIC12.17□□□□□ -0.46
Cdc40Q9DC48 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Gm7561-201ENSMUST00000211203 886 ntBASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 AC122459.1-201ENSMUST00000228373 885 ntBASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cdc40Q9DC48 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Tmed9-203ENSMUST00000224741 1450 ntBASIC12.16□□□□□ -0.46
Cdc40Q9DC48 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms