Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Limch1Q3UH68 AC121805.2-201ENSMUST00000218808 2538 ntBASIC15.44■□□□□ 0.06
Limch1Q3UH68 AC096628.2-201ENSMUST00000225443 1413 ntBASIC15.43■□□□□ 0.06
Limch1Q3UH68 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Gm29649-201ENSMUST00000185649 419 ntBASIC15.43■□□□□ 0.06
Limch1Q3UH68 Gm29127-201ENSMUST00000188304 517 ntBASIC15.43■□□□□ 0.06
Limch1Q3UH68 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Gm38223-201ENSMUST00000194484 695 ntBASIC15.43■□□□□ 0.06
Limch1Q3UH68 Gm42693-201ENSMUST00000196779 631 ntBASIC15.43■□□□□ 0.06
Limch1Q3UH68 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Limch1Q3UH68 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Limch1Q3UH68 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC15.42■□□□□ 0.06
Limch1Q3UH68 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Gm15371-201ENSMUST00000117057 784 ntBASIC15.42■□□□□ 0.06
Limch1Q3UH68 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Gm17420-201ENSMUST00000164753 153 ntBASIC15.42■□□□□ 0.06
Limch1Q3UH68 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC15.42■□□□□ 0.06
Limch1Q3UH68 AC134335.2-201ENSMUST00000227660 440 ntBASIC15.42■□□□□ 0.06
Limch1Q3UH68 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Gm10012-201ENSMUST00000078252 192 ntBASIC15.42■□□□□ 0.06
Limch1Q3UH68 Rn7sk-201ENSMUST00000083103 331 ntBASIC15.42■□□□□ 0.06
Limch1Q3UH68 Gm26315-201ENSMUST00000083890 321 ntBASIC15.42■□□□□ 0.06
Limch1Q3UH68 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Limch1Q3UH68 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC15.41■□□□□ 0.06
Limch1Q3UH68 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
Limch1Q3UH68 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Limch1Q3UH68 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms