Protein–RNA interactions for Protein: P79621

Ciita, MHC class II transactivator, mousemouse

Predictions only

Length 1,155 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CiitaP79621 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CiitaP79621 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CiitaP79621 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CiitaP79621 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Gm11658-201ENSMUST00000120913 1008 ntBASIC14.17□□□□□ -0.14
CiitaP79621 Gm8801-201ENSMUST00000173255 1064 ntBASIC14.17□□□□□ -0.14
CiitaP79621 Gm2467-201ENSMUST00000182266 1010 ntBASIC14.17□□□□□ -0.14
CiitaP79621 Gm6981-201ENSMUST00000182467 1008 ntBASIC14.17□□□□□ -0.14
CiitaP79621 Mir8109-201ENSMUST00000184375 117 ntBASIC14.17□□□□□ -0.14
CiitaP79621 AC159896.2-201ENSMUST00000214753 269 ntBASIC14.17□□□□□ -0.14
CiitaP79621 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC14.17□□□□□ -0.14
CiitaP79621 AC154319.1-201ENSMUST00000216330 312 ntBASIC14.17□□□□□ -0.14
CiitaP79621 AL589735.1-201ENSMUST00000224353 270 ntBASIC14.17□□□□□ -0.14
CiitaP79621 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CiitaP79621 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Gm9025-201ENSMUST00000122415 1575 ntBASIC14.17□□□□□ -0.14
CiitaP79621 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CiitaP79621 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC14.17□□□□□ -0.14
CiitaP79621 AC113060.1-201ENSMUST00000225689 1573 ntBASIC14.17□□□□□ -0.14
CiitaP79621 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CiitaP79621 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
CiitaP79621 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CiitaP79621 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC14.16□□□□□ -0.14
CiitaP79621 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
CiitaP79621 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CiitaP79621 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
CiitaP79621 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CiitaP79621 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC14.16□□□□□ -0.14
CiitaP79621 Gm13786-201ENSMUST00000122371 333 ntBASIC14.16□□□□□ -0.14
CiitaP79621 Gm24548-201ENSMUST00000158650 108 ntBASIC14.16□□□□□ -0.14
CiitaP79621 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC14.16□□□□□ -0.14
CiitaP79621 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC14.16□□□□□ -0.14
CiitaP79621 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC14.16□□□□□ -0.14
CiitaP79621 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC14.16□□□□□ -0.14
CiitaP79621 Gm42627-201ENSMUST00000197347 224 ntBASIC14.16□□□□□ -0.14
CiitaP79621 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC14.16□□□□□ -0.14
CiitaP79621 Gm18584-201ENSMUST00000203098 964 ntBASIC14.16□□□□□ -0.14
CiitaP79621 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC14.16□□□□□ -0.14
CiitaP79621 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC14.16□□□□□ -0.14
CiitaP79621 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
CiitaP79621 Acot6-202ENSMUST00000222921 3622 ntBASIC14.16□□□□□ -0.14
CiitaP79621 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CiitaP79621 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
CiitaP79621 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CiitaP79621 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CiitaP79621 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
CiitaP79621 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CiitaP79621 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CiitaP79621 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CiitaP79621 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CiitaP79621 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC14.15□□□□□ -0.14
CiitaP79621 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CiitaP79621 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CiitaP79621 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CiitaP79621 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC14.15□□□□□ -0.14
CiitaP79621 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CiitaP79621 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC14.15□□□□□ -0.14
CiitaP79621 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CiitaP79621 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CiitaP79621 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CiitaP79621 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CiitaP79621 Gm18222-201ENSMUST00000202416 1387 ntBASIC14.15□□□□□ -0.14
CiitaP79621 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC14.15□□□□□ -0.14
CiitaP79621 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
CiitaP79621 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC14.15□□□□□ -0.14
CiitaP79621 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms