Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Brf1Q8CFK2 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Brf1Q8CFK2 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Brf1Q8CFK2 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Brf1Q8CFK2 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Brf1Q8CFK2 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Brf1Q8CFK2 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Brf1Q8CFK2 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Brf1Q8CFK2 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Brf1Q8CFK2 Gm9025-201ENSMUST00000122415 1575 ntBASIC15.83■□□□□ 0.13
Brf1Q8CFK2 AC113060.1-201ENSMUST00000225689 1573 ntBASIC15.83■□□□□ 0.13
Brf1Q8CFK2 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Brf1Q8CFK2 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
Brf1Q8CFK2 Gm8798-201ENSMUST00000211877 1661 ntBASIC15.83■□□□□ 0.13
Brf1Q8CFK2 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Brf1Q8CFK2 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.13
Brf1Q8CFK2 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Brf1Q8CFK2 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Mup-ps23-201ENSMUST00000118063 630 ntBASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Gm44799-201ENSMUST00000207639 1202 ntBASIC15.83■□□□□ 0.12
Brf1Q8CFK2 AC135669.1-202ENSMUST00000216742 540 ntBASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Gm45706-201ENSMUST00000213063 2136 ntBASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Brf1Q8CFK2 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Gm13369-201ENSMUST00000119442 987 ntBASIC15.82■□□□□ 0.12
Brf1Q8CFK2 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Gm7561-201ENSMUST00000211203 886 ntBASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 AC154747.3-201ENSMUST00000224471 3470 ntBASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Brf1Q8CFK2 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Gm8805-201ENSMUST00000117848 313 ntBASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Gm5385-201ENSMUST00000118988 1559 ntBASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Gm22331-201ENSMUST00000158066 136 ntBASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Gm28693-202ENSMUST00000190758 331 ntBASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Gm37922-201ENSMUST00000195596 455 ntBASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Gm45684-201ENSMUST00000210244 1571 ntBASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC15.81■□□□□ 0.12
Brf1Q8CFK2 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Gm6091-201ENSMUST00000098307 165 ntBASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
Brf1Q8CFK2 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Brf1Q8CFK2 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Brf1Q8CFK2 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Brf1Q8CFK2 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC15.8■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms