Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC12.54□□□□□ -0.4
Nr1h4Q60641 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Gm18263-201ENSMUST00000220846 1928 ntBASIC12.54□□□□□ -0.4
Nr1h4Q60641 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Nr1h4Q60641 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Gm42690-201ENSMUST00000197921 1836 ntBASIC12.53□□□□□ -0.4
Nr1h4Q60641 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Gm43417-201ENSMUST00000201586 5207 ntBASIC12.53□□□□□ -0.4
Nr1h4Q60641 Gm10686-201ENSMUST00000215389 3247 ntBASIC12.53□□□□□ -0.4
Nr1h4Q60641 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Gm14730-201ENSMUST00000122378 1045 ntBASIC12.53□□□□□ -0.4
Nr1h4Q60641 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC12.53□□□□□ -0.4
Nr1h4Q60641 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Gm19931-201ENSMUST00000198920 368 ntBASIC12.53□□□□□ -0.4
Nr1h4Q60641 Gm7498-201ENSMUST00000203282 1084 ntBASIC12.53□□□□□ -0.4
Nr1h4Q60641 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Gm24447-201ENSMUST00000083977 338 ntBASIC12.53□□□□□ -0.4
Nr1h4Q60641 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nr1h4Q60641 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Nr1h4Q60641 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Nr1h4Q60641 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Nr1h4Q60641 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.4
Nr1h4Q60641 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Nr1h4Q60641 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Nr1h4Q60641 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Nr1h4Q60641 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC12.52□□□□□ -0.4
Nr1h4Q60641 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.4
Nr1h4Q60641 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Nr1h4Q60641 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Nr1h4Q60641 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Nr1h4Q60641 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Cd63-ps-201ENSMUST00000145417 875 ntBASIC12.52□□□□□ -0.41
Nr1h4Q60641 Gm25948-201ENSMUST00000175334 112 ntBASIC12.52□□□□□ -0.41
Nr1h4Q60641 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 AC151286.1-201ENSMUST00000198489 145 ntBASIC12.52□□□□□ -0.41
Nr1h4Q60641 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC12.52□□□□□ -0.41
Nr1h4Q60641 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Gm8396-201ENSMUST00000057361 823 ntBASIC12.52□□□□□ -0.41
Nr1h4Q60641 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Nr1h4Q60641 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms