Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Gm12846-201ENSMUST00000120431 1373 ntBASIC14.36□□□□□ -0.11
Lig3P97386 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Lig3P97386 Gm7002-201ENSMUST00000221386 2165 ntBASIC14.36□□□□□ -0.11
Lig3P97386 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Lig3P97386 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Lig3P97386 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 AC164702.1-201ENSMUST00000220135 2212 ntBASIC14.36□□□□□ -0.11
Lig3P97386 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC14.36□□□□□ -0.11
Lig3P97386 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC14.36□□□□□ -0.11
Lig3P97386 Gm12882-201ENSMUST00000121696 517 ntBASIC14.36□□□□□ -0.11
Lig3P97386 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC14.36□□□□□ -0.11
Lig3P97386 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Lig3P97386 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC14.36□□□□□ -0.11
Lig3P97386 Gm3786-201ENSMUST00000202659 378 ntBASIC14.36□□□□□ -0.11
Lig3P97386 Gm6983-201ENSMUST00000214912 628 ntBASIC14.36□□□□□ -0.11
Lig3P97386 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
Lig3P97386 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
Lig3P97386 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Lig3P97386 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC14.36□□□□□ -0.11
Lig3P97386 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Lig3P97386 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Lig3P97386 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lig3P97386 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Lig3P97386 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Lig3P97386 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC14.35□□□□□ -0.11
Lig3P97386 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC14.35□□□□□ -0.11
Lig3P97386 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Lig3P97386 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
Lig3P97386 Gm16177-201ENSMUST00000120728 718 ntBASIC14.35□□□□□ -0.11
Lig3P97386 Gm15376-201ENSMUST00000122258 783 ntBASIC14.35□□□□□ -0.11
Lig3P97386 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC14.35□□□□□ -0.11
Lig3P97386 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Gm19309-201ENSMUST00000218295 205 ntBASIC14.35□□□□□ -0.11
Lig3P97386 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC14.35□□□□□ -0.11
Lig3P97386 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC14.35□□□□□ -0.11
Lig3P97386 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Lig3P97386 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Lig3P97386 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Lig3P97386 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
Lig3P97386 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lig3P97386 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Lig3P97386 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lig3P97386 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lig3P97386 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC14.34□□□□□ -0.11
Lig3P97386 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lig3P97386 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lig3P97386 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lig3P97386 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lig3P97386 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lig3P97386 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Lig3P97386 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Lig3P97386 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lig3P97386 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lig3P97386 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lig3P97386 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lig3P97386 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lig3P97386 Gm13689-201ENSMUST00000119360 685 ntBASIC14.34□□□□□ -0.11
Lig3P97386 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC14.34□□□□□ -0.11
Lig3P97386 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lig3P97386 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lig3P97386 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lig3P97386 Gm26464-201ENSMUST00000157094 305 ntBASIC14.34□□□□□ -0.11
Lig3P97386 Gm22331-201ENSMUST00000158066 136 ntBASIC14.34□□□□□ -0.11
Lig3P97386 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lig3P97386 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 93.9 ms