Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC15.69■□□□□ 0.1
Rfx1P48377 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rfx1P48377 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC15.68■□□□□ 0.1
Rfx1P48377 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Rfx1P48377 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Rfx1P48377 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Gm3052-202ENSMUST00000188254 2224 ntBASIC15.68■□□□□ 0.1
Rfx1P48377 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC15.68■□□□□ 0.1
Rfx1P48377 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Rfx1P48377 Gm7390-201ENSMUST00000212452 1216 ntBASIC15.68■□□□□ 0.1
Rfx1P48377 Gm6888-201ENSMUST00000221983 706 ntBASIC15.68■□□□□ 0.1
Rfx1P48377 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC15.68■□□□□ 0.1
Rfx1P48377 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
Rfx1P48377 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rfx1P48377 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
Rfx1P48377 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Rfx1P48377 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
Rfx1P48377 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC15.67■□□□□ 0.1
Rfx1P48377 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC15.67■□□□□ 0.1
Rfx1P48377 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC15.67■□□□□ 0.1
Rfx1P48377 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Rfx1P48377 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC15.67■□□□□ 0.1
Rfx1P48377 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC15.67■□□□□ 0.1
Rfx1P48377 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 AC151286.1-201ENSMUST00000198489 145 ntBASIC15.67■□□□□ 0.1
Rfx1P48377 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Rfx1P48377 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC15.67■□□□□ 0.1
Rfx1P48377 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Rfx1P48377 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 Gm38037-201ENSMUST00000192600 1624 ntBASIC15.67■□□□□ 0.1
Rfx1P48377 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC15.67■□□□□ 0.1
Rfx1P48377 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Rfx1P48377 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Rfx1P48377 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rfx1P48377 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Rfx1P48377 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
Rfx1P48377 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
Rfx1P48377 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC15.66■□□□□ 0.1
Rfx1P48377 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Rfx1P48377 Gm27321-201ENSMUST00000185021 205 ntBASIC15.66■□□□□ 0.1
Rfx1P48377 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC15.66■□□□□ 0.1
Rfx1P48377 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC15.66■□□□□ 0.1
Rfx1P48377 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
Rfx1P48377 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Rfx1P48377 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
Rfx1P48377 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC15.66■□□□□ 0.1
Rfx1P48377 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Rfx1P48377 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
Rfx1P48377 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms