Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Usp11Q99K46 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Usp11Q99K46 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Usp11Q99K46 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Usp11Q99K46 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Usp11Q99K46 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Usp11Q99K46 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Usp11Q99K46 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Usp11Q99K46 AC117194.1-201ENSMUST00000224847 3002 ntBASIC13.87□□□□□ -0.19
Usp11Q99K46 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Usp11Q99K46 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC13.87□□□□□ -0.19
Usp11Q99K46 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Usp11Q99K46 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Usp11Q99K46 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Usp11Q99K46 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
Usp11Q99K46 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC13.87□□□□□ -0.19
Usp11Q99K46 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Usp11Q99K46 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 Gm14730-201ENSMUST00000122378 1045 ntBASIC13.86□□□□□ -0.19
Usp11Q99K46 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Mir6392-201ENSMUST00000184924 108 ntBASIC13.86□□□□□ -0.19
Usp11Q99K46 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Gm7498-201ENSMUST00000203282 1084 ntBASIC13.86□□□□□ -0.19
Usp11Q99K46 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Usp11Q99K46 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Usp11Q99K46 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Usp11Q99K46 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC13.85□□□□□ -0.19
Usp11Q99K46 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Usp11Q99K46 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Usp11Q99K46 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC13.85□□□□□ -0.19
Usp11Q99K46 Gm26464-201ENSMUST00000157094 305 ntBASIC13.85□□□□□ -0.19
Usp11Q99K46 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC13.85□□□□□ -0.19
Usp11Q99K46 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC13.85□□□□□ -0.19
Usp11Q99K46 Gm7558-201ENSMUST00000193221 1165 ntBASIC13.85□□□□□ -0.19
Usp11Q99K46 Gm18018-201ENSMUST00000198273 408 ntBASIC13.85□□□□□ -0.19
Usp11Q99K46 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC13.85□□□□□ -0.19
Usp11Q99K46 AC155286.1-201ENSMUST00000218632 448 ntBASIC13.85□□□□□ -0.19
Usp11Q99K46 Arhgef33-209ENSMUST00000225223 714 ntBASIC13.85□□□□□ -0.19
Usp11Q99K46 AC238811.3-201ENSMUST00000225422 709 ntBASIC13.85□□□□□ -0.19
Usp11Q99K46 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Usp11Q99K46 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
Usp11Q99K46 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
Usp11Q99K46 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Usp11Q99K46 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Usp11Q99K46 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Usp11Q99K46 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Usp11Q99K46 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Usp11Q99K46 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
Usp11Q99K46 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Usp11Q99K46 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Usp11Q99K46 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms