Protein–RNA interactions for Protein: Q03958

Pfdn6, Prefoldin subunit 6, mousemouse

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pfdn6Q03958 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC13.24□□□□□ -0.29
Pfdn6Q03958 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Auts2-212ENSMUST00000178555 309 ntBASIC13.24□□□□□ -0.29
Pfdn6Q03958 Gm27437-201ENSMUST00000183429 107 ntBASIC13.24□□□□□ -0.29
Pfdn6Q03958 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 AC158982.1-201ENSMUST00000228377 901 ntBASIC13.24□□□□□ -0.29
Pfdn6Q03958 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Gm7899-201ENSMUST00000192935 1897 ntBASIC13.24□□□□□ -0.29
Pfdn6Q03958 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Pfdn6Q03958 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 AC154527.2-201ENSMUST00000225256 1466 ntBASIC13.23□□□□□ -0.29
Pfdn6Q03958 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Gm43273-201ENSMUST00000199649 2594 ntBASIC13.23□□□□□ -0.29
Pfdn6Q03958 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC13.23□□□□□ -0.29
Pfdn6Q03958 AC173210.1-201ENSMUST00000222341 1131 ntBASIC13.23□□□□□ -0.29
Pfdn6Q03958 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
Pfdn6Q03958 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Gm43134-201ENSMUST00000199434 1886 ntBASIC13.23□□□□□ -0.29
Pfdn6Q03958 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Pfdn6Q03958 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Gm37917-201ENSMUST00000194711 392 ntBASIC13.22□□□□□ -0.29
Pfdn6Q03958 Gm19931-201ENSMUST00000198920 368 ntBASIC13.22□□□□□ -0.29
Pfdn6Q03958 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC13.22□□□□□ -0.29
Pfdn6Q03958 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Pfdn6Q03958 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms