Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 AC165157.4-201ENSMUST00000220587 139 ntBASIC12.54□□□□□ -0.4
Lire1P11260 Gm18624-201ENSMUST00000220966 658 ntBASIC12.54□□□□□ -0.4
Lire1P11260 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Lire1P11260 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Lire1P11260 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC12.53□□□□□ -0.4
Lire1P11260 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Lire1P11260 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Gm6157-201ENSMUST00000199935 1897 ntBASIC12.53□□□□□ -0.4
Lire1P11260 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Tmbim1-202ENSMUST00000113796 11011 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Gm15824-201ENSMUST00000119516 955 ntBASIC12.53□□□□□ -0.4
Lire1P11260 Gm15806-201ENSMUST00000120696 955 ntBASIC12.53□□□□□ -0.4
Lire1P11260 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Lire1P11260 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC12.53□□□□□ -0.4
Lire1P11260 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC12.53□□□□□ -0.4
Lire1P11260 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Lire1P11260 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Gm9002-201ENSMUST00000178437 499 ntBASIC12.53□□□□□ -0.4
Lire1P11260 Olfr1227-ps1-201ENSMUST00000215627 928 ntBASIC12.53□□□□□ -0.4
Lire1P11260 Gm18165-201ENSMUST00000217426 928 ntBASIC12.53□□□□□ -0.4
Lire1P11260 AC149588.3-201ENSMUST00000227515 150 ntBASIC12.53□□□□□ -0.4
Lire1P11260 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
Lire1P11260 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Lire1P11260 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC12.53□□□□□ -0.4
Lire1P11260 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC12.53□□□□□ -0.4
Lire1P11260 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Lire1P11260 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lire1P11260 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Lire1P11260 Gm45630-201ENSMUST00000210243 1911 ntBASIC12.52□□□□□ -0.4
Lire1P11260 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lire1P11260 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lire1P11260 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lire1P11260 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lire1P11260 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Lire1P11260 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lire1P11260 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lire1P11260 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Lire1P11260 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lire1P11260 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Lire1P11260 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lire1P11260 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Lire1P11260 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lire1P11260 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lire1P11260 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lire1P11260 Gm13829-201ENSMUST00000119600 138 ntBASIC12.52□□□□□ -0.41
Lire1P11260 Gm11918-201ENSMUST00000121660 179 ntBASIC12.52□□□□□ -0.41
Lire1P11260 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Lire1P11260 Gm10275-202ENSMUST00000168697 495 ntBASIC12.52□□□□□ -0.41
Lire1P11260 Gm44719-201ENSMUST00000206404 149 ntBASIC12.52□□□□□ -0.41
Lire1P11260 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lire1P11260 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lire1P11260 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC12.52□□□□□ -0.41
Lire1P11260 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC12.52□□□□□ -0.41
Lire1P11260 AC123645.1-201ENSMUST00000228469 605 ntBASIC12.52□□□□□ -0.41
Lire1P11260 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lire1P11260 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Lire1P11260 Gm10275-201ENSMUST00000092620 635 ntBASIC12.52□□□□□ -0.41
Lire1P11260 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC12.52□□□□□ -0.41
Lire1P11260 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lire1P11260 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Lire1P11260 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Lire1P11260 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC12.52□□□□□ -0.41
Lire1P11260 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms